LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste3g03227	TTGTGCTTAATCCGTGCACTTGAGGTAACCCAATTTGGTGTCCACTCATTTGACGAGATTCCTGTTGTGAAAACAATTTGTAGGATCAGCAGAGAGAAGTTAGTTATTAGGATATTGGCTTTTGGCTGTTTGAGGTTTAGTCAAATTGATGCTGTAATGGGAGATTATAAGAGTTTTTCATTTTCCAAAATGATGGGCTGCTGTGGTTGCTTTGGATTTGTCAAAAAACCAAGAAGGCGTCCTGTTAAACGTGGCATCAGCAATTTTCTCTCCCAGGGGCTATTATTAGATGGAGAAACTGAAGGTGATGAGACATGTAGTGGTGAGGTTACTAGTAATGCTACAAGTGGAGATGATAATGAGGTGCAAGCTGTACGCAACCGTTCGGAGGACATTTTGAACTTTAGAGCTGAGAATGGCATGGTTTGTAGGCCGTTTCCTGTTAAGGAGACTTGCCAACTTGTTCGCTCAGAGGATGAAAATGGAAACAAGATCATAAATGAATATGTTCGAGAGTATAAAATTGGTTCTGGAAGCTATGGCAAAGTGGCTCTTTATCGAAGTTGTGTTGACGGAAAGCATTATGCTATTAAGTCCTTTCATAAATCTCATTTACAAAAGCTTCGGGTTGCACCTTCGGAGACTGCCATGACTGATGTTCTGCGTGAGGTTCTGATTATGAAAATGGTGGAACATCCTAATATAGTCAATCTTATTGAGGTGATTGATGACCCAGAGTCGGATGACTTCTACATGGTACTTGAATATGTGGAAAGCAAATGGGTGTGTGAGGGTACAGGTCGTCCATGTGCATTAGGGGAAGAGACTGCTAGGAAATACTTGCGTGATATAGTCTCAGGATTAACTTATCTCCATGCTCATAATATAGTGCATGGGGATATAAAGCCTGATAATCTGTTGATTACTCGCCATGGCACTGTAAAGATAGGGGATTTCAGTGTCAGCCAGGCTTTTGAGGATGGCAATGATGAACTTCGTAGATCACCCGGAACTCCTGTTTTCACTGCACCAGAATGTTGTTTAGGTCTTACTTATCATGGTAAAGCTTCTGACACGTGGGCTGTAGGAGTTACGTTGTACTGTATGATATTGGGTGAATACCCGTTTCTTGGAGACACACTTCAAGACACTTACGACAAAATAGTCAATGATCCTTTAGTTCTGCCAGATGATATTAACCCTCAGTTAAAGAACTTAATAGAAGGATTACTATGCAAAGACCCAGGACTAAGGATGACACTGAGCGATGTCGCCGAGCATATCTGGGTTATTGGAGATGATGGGCCAATTCCTGAGTACTTATGTTGGTGCAAACGCAAGAGCATAGTAACTGAAGATTTTGATGGGAGCAATATACTTGCTTGACCCATACTGTTTTTAAGTTGGATTTCTTATGTACAGTGTGTGATAACGCCAGTAATTTTTCTCCCAATATGACCCACGGGGGGTTGTTATGATCACTAGAGGGAGTCTCCAAAAGAATCCTTAGTAATTAAGAAAATACAGCTCATGTTGCCGACAATCAGGCCTGTTTTATTTTTGTGTTGTGAAGCATTTGGTGTCTACGGCTCTTAGGCATAGAATGAGTATTTTTCTCAAGCACGTGCCGACTTGTGTTCAGTTCATACTATATACATATTCCCATTCCTTGGAGTGTTTTGTTTATATGCTTTGGTTTAAGATTCAAAGAATTTGATTATTCAACAATCCACGCTAATAAGGTGGATTGTCAAATTAATATATGAAACTCCACTCCTAAGGTCTTTGTCAATGTAACACAATGGATTCTCGCCAAACCTCTCGGCTCTCGGCAGAGCAACTGGCTTTTAATCTGCTTTTAGATGAGAAGTGAGAAGTTCCAAC	1884	0.4071	LCLIRALEVTQFGVHSFDEIPVVKTICRISREKLVIRILAFGCLRFSQIDAVMGDYKSFSFSKMMGCCGCFGFVKKPRRRPVKRGISNFLSQGLLLDGETEGDETCSGEVTSNATSGDDNEVQAVRNRSEDILNFRAENGMVCRPFPVKETCQLVRSEDENGNKIINEYVREYKIGSGSYGKVALYRSCVDGKHYAIKSFHKSHLQKLRVAPSETAMTDVLREVLIMKMVEHPNIVNLIEVIDDPESDDFYMVLEYVESKWVCEGTGRPCALGEETARKYLRDIVSGLTYLHAHNIVHGDIKPDNLLITRHGTVKIGDFSVSQAFEDGNDELRRSPGTPVFTAPECCLGLTYHGKASDTWAVGVTLYCMILGEYPFLGDTLQDTYDKIVNDPLVLPDDINPQLKNLIEGLLCKDPGLRMTLSDVAEHIWVIGDDGPIPEYLCWCKRKSIVTEDFDGSNILA	461

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste3g03227	461	Gene3D	Transferase(Phosphotransferase) domain 1	268	436	-	-
	Pste3g03227	461	PANTHER	MAP/MICROTUBULE AFFINITY-REGULATING KINASE	126	432	-	-
	Pste3g03227	461	ProSiteProfiles	Protein kinase domain profile.	169	430	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste3g03227	461	FunFam	Serine/threonine-protein kinase Ssp1	163	265	-	-
	Pste3g03227	461	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	296	308	IPR008271	GO:0004672\|GO:0006468
	Pste3g03227	461	Gene3D	Phosphorylase Kinase; domain 1	163	266	-	-
	Pste3g03227	461	ProSitePatterns	Protein kinases ATP-binding region signature.	175	198	IPR017441	GO:0005524
	Pste3g03227	461	CDD	STKc_LKB1_CaMKK	175	430	-	-
	Pste3g03227	461	SMART	serkin_6	169	430	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste3g03227	461	Pfam	Protein kinase domain	169	430	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste3g03227	461	SUPERFAMILY	Protein kinase-like (PK-like)	165	442	IPR011009	-
	Pste3g03227	461	FunFam	Serine/threonine-protein kinase GRIK2	159	459	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste3g03227	Pste-Chr3	24972270	24977489	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste3g03227	175	437	CBL-interacting serine-threonine protein kinases	AT5G35410	33.460	1.33e-41	150

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-LKB	Pste3g03227		Pkinase	3.8e-57	CL0016