Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03224 GGAGAAAAGGAGTGAGGGTGGCACTTTGTTATTGTTGGTTGGATACATGCTCAATTTTATGTGTTACCCAATTTAAGGTGTTTCTCCTTCTGAATTCACAAAGTGGCAGTACTTGCAACTTGTTGCTTTGCTTTGTCACCACAGAATGAGTGCTCACCAAAAAGAAAAACAACAAGATGACGCACCTTCCTCCAAAGCAACGGTTTCTCTTCCACTTGACAAGGTGGATGATCCAATGGGGGATGTGAATGAAACCTCGTATGTTAATAATGATTGGAAAACACAGCTGGAAATACCTGTGAGAACATCCCAGGATTTTGTTGCAATAAGGATGCCACTCACGCCAAGTCCAACTCCTACTCATAAGAAAGTCAATTTTCTTGTTACTTCTCGTTCTGTTGATGCTCCAAGGCCTTCTTCATCATCCAGAGGCAAATCTTCCATGAGAAGCATCTTACCAAAATTCGGCTTCAGGAATCGTGCATCGCTTGATATTGAAAAGCCTGTTACTTCAGCTCAAGAAGCTTTCTTTTCTGGCCATCAGGACAAGTCTCCAATCTCAAGATCACTGTCTCTCTCCAAGATATTCGTTTCTAAGATTAAGAGAACGTCTTCATTACCGGTAGAAGAAATTGGGCGAGCAAACGCAGAATCTGTTCTCGATGGAGCTCTTGCTGCTTCTCCACGTAGAAGAGAATCCCAGGGAATGATAGTTCGTTCTCGTTCAGTGCCTGTCAATGACAACGAAAAAGGCATAAGAAGAATGGATTCAGTTTTCCGCATTATTCCTTCCACCCCTCGCGTAAACGAATTGAATGAAACAGCAAAGGATACTGAAAATGGTGGTGAAGACATTGCTGAAGAGGAAGCGGTGTGTAGAATTTGTCTGGTTGATCTATGTGAAGGAGGGGAGACATTAAAGATGGAATGCAGCTGCAAAGGTGAACTTGCTCTGGCTCACCAAGAATGTGCTGTTAAATGGTTTAGCATCAAGGGGAACAAGACCTGTGATGTGTGCAAAGAGGAGGTTCGGAACCTGCCAGTCACTCTCTTACGGATCCGAAGTGTTCAAACTCAAAATACTGGAGCAACGTCCGATCAGGGAGATGAATACAGGCACGTGGTTTGGCAGGAACTCCCAGTACTTGTCATTGTCAGCATGCTTGCCTATTTCTGTTTCCTTGAGCAGCTGTTGGTTGGAAAAATGGGAACGAAGGCAATTTTCGTCTCTCTTCCATTTTCCTGTGTACTGGGTCTACTATCCTCCGTGACATCATCAACCATGGGTAGGTTAGCAAAATATGCCTTGTTAAATATTGTCAAGATACTTTTATGGGAAACTCTTCAGTGTCATAGTTTAGTTTACAAAAAAAATGGTAAACTTTATAGAATCTTGTATGGTCTAAAAATGATGTGGCAATTGCTGATTGATTTATTACAATTACATGAAGCTTTTGGAGAATTCTTATTCGTGATCCTTTCTTTGTTGGCTGACTTAGTTGATGGTTGGTTGGGTTTCACTAACATATATGCAACTTTGTTTTCCAGTGAAGAGCAGGTTCATCTGGATTTATGCATCTGTCCAATTTGCTTTGGTAGTCATATTCGCCCATATATTTTACCCCATGGTAATAGATTTGATAGGAGCTATATTCTTATTAAACAAATTTTCACATGACACCAAGATTGACCAAATATTTTGAGAAATATATAGTCCAAGATTGAGGGTTGGTTCAAATATTCTGGTAAGATGGAAAAGCTGTGACAAAAATAAATTGTTTCAAATCCAGCTTACCACTCTGGCTTTTGACATGTTCTCAATCCTGCTCATAAAATGAGACAACCTCTCATTGACTTGGATATTTTTATTACCAAAAGGAAAATAGTCAAATGGATCGGAATTCAAACTTAGCACGTACTGACTTGATTGGATTAAAACTTGGTGAATTGCAGGTTGGTAAACACGCAGTCTTGGCAATACTTCTTGCAACATTTGCTGGGTTTGGTGTGGTGATGAGTGGAAGTTCAATTCTTTTGGAGACTTGTAGATGGAGAAGAAGATGGCAAGCAGCTTTAACAGAGCAGCAGCGTGGTTCTCATGCTATGACACAAGAAGGGCTATCAAATCAGAGCTGAATATTGTCAATTGTCATTGTATAGGCGATTAAGCTTTGGAAGGATTTTATTGTACAACTTATATATTGTCCAAATAGAGAATAACATAGCACTAGTTTTTCCTTGTTTTTGTTTATTTCTTTGTACTTTAGCATTTCAACACACCGAAACAAGAATGCCTCAGGCCTTTTTTTAGTATTTAGGTATGGACAAAAGCTATTTGTGAAGTAAAATAGGAGCATGCTTTTTGTTTGTGTAATATTATTAACAAAGTTCAAATACTAAACACTCCCTGC 2411 0.3953 MSAHQKEKQQDDAPSSKATVSLPLDKVDDPMGDVNETSYVNNDWKTQLEIPVRTSQDFVAIRMPLTPSPTPTHKKVNFLVTSRSVDAPRPSSSSRGKSSMRSILPKFGFRNRASLDIEKPVTSAQEAFFSGHQDKSPISRSLSLSKIFVSKIKRTSSLPVEEIGRANAESVLDGALAASPRRRESQGMIVRSRSVPVNDNEKGIRRMDSVFRIIPSTPRVNELNETAKDTENGGEDIAEEEAVCRICLVDLCEGGETLKMECSCKGELALAHQECAVKWFSIKGNKTCDVCKEEVRNLPVTLLRIRSVQTQNTGATSDQGDEYRHVVWQELPVLVIVSMLAYFCFLEQLLVGKMGTKAIFVSLPFSCVLGLLSSVTSSTMGRLAKYALLNIVKILLWETLQCHSLVYKKNGKLYRILYGLKMMWQLLIDLLQLHEAFGEFLFVILSLLADLVDGWLGFTNIYATLFSSEEQVHLDLCICPICFGSHIRPYILPHGNRFDRSYILIKQIFT 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03224 510 SMART ringv_2 243 292 IPR011016 GO:0008270
Pste3g03224 510 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 229 299 IPR013083 -
Pste3g03224 510 PANTHER OS02G0165000 PROTEIN 8 389 - -
Pste3g03224 510 MobiDBLite consensus disorder prediction 1 38 - -
Pste3g03224 510 MobiDBLite consensus disorder prediction 83 102 - -
Pste3g03224 510 CDD RING_CH-C4HC3_MARCH 244 292 - -
Pste3g03224 510 SUPERFAMILY RING/U-box 240 295 - -
Pste3g03224 510 MobiDBLite consensus disorder prediction 83 100 - -
Pste3g03224 510 ProSiteProfiles Zinc finger RING-CH-type profile. 236 298 IPR011016 GO:0008270
Pste3g03224 510 Pfam RING-variant domain 244 291 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03224 Pste-Chr3 24910179 24914322 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03224 241 298 C3H Transcription Factor Family AT2G37950 47.458 4.88e-13 66.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03224 3 24910179 24914322 Pste3g03224 3 24910179 24914322 ECH
Pste3g03224 3 24910179 24914322 Pste1g02609 1 10002211 10007338 PCT