Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03219 GAAGAAGCACTTGGCTTTGGCTTCTTCTTAGTTCTTTCCTTTTTTCGCTTCGGCTCCGTTAGGTTTTCCTTCCGCCCCTTTACTCGGAACTACTCCTCCACTTATCGCTTAGCAACGTCGATTAGAAGCTGGATATGGTCATCGGTTTAGTCAATTTTTGGGTTCTCGGGCTTGCTTGAATTCGGGACCCTAATACTCACTAATTTATTAAAGTTTAAAATGTCTGATGTGGAAGAGTATCGTTGCTTCATTGGTGGCCTTGCCTGGTCAACATCTGATAGAAAGTTAAAGGATACATTTGAAAAGTTCGGCAAGCTTATTGAGGCTAAGGTGGTTGTTGACAAGTTCTCTGGGCGTTCTCGTGGTTTTGGATTTGTAACATTTGATGAAAAGAAAGCAATGGAAGAGGCCATTGATGCTATGAATGGGATGGATTTAGATGGGCGGACTATTACTGTTGATAGAGCTCAGCCTCAACAAGGATCAACTAGAGATGATGGTGATCGCTACCGGGAGCGTGGTCGTGATCGTGATCGTAACCGAGATTATGGAGGTGGAGGTGGTCGAGGATCTAATGGTGGTGAATGCTTTAAGTGTGGAAAACCTGGTCATTTTGCTAGGGAATGCCCTAGTGAAGGGGGCAGAGGGGGAAGGTATGGTGGTAGGGAAAGTAGATATGGCGGAAGCAGTGGTGGTGGTCACTATGGTCCGGACAGAAATGCAGATCGTTCTTCAGGGGGGCGTAGCAGGGATTCTGGTAATCACGGAGATTCTGGAAATGACCGATATTATCGTGATCGTGCAGGACCATATGAGCGACGGGGATCGGGAAGCTTTCGTTGA 843 0.465 MSDVEEYRCFIGGLAWSTSDRKLKDTFEKFGKLIEAKVVVDKFSGRSRGFGFVTFDEKKAMEEAIDAMNGMDLDGRTITVDRAQPQQGSTRDDGDRYRERGRDRDRNRDYGGGGGRGSNGGECFKCGKPGHFARECPSEGGRGGRYGGRESRYGGSSGGGHYGPDRNADRSSGGRSRDSGNHGDSGNDRYYRDRAGPYERRGSGSFR 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03219 207 SMART c2hcfinal6 122 138 IPR001878 GO:0003676|GO:0008270
Pste3g03219 207 MobiDBLite consensus disorder prediction 88 111 - -
Pste3g03219 207 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 79 IPR000504 GO:0003723
Pste3g03219 207 CDD RRM2_NsCP33_like 8 83 - -
Pste3g03219 207 Pfam Zinc knuckle 122 138 IPR001878 GO:0003676|GO:0008270
Pste3g03219 207 SMART rrm1_1 8 81 IPR000504 GO:0003723
Pste3g03219 207 MobiDBLite consensus disorder prediction 168 200 - -
Pste3g03219 207 ProSiteProfiles Zinc finger CCHC-type profile. 123 138 IPR001878 GO:0003676|GO:0008270
Pste3g03219 207 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Pste3g03219 207 Gene3D - 2 118 IPR012677 -
Pste3g03219 207 MobiDBLite consensus disorder prediction 76 207 - -
Pste3g03219 207 SUPERFAMILY RNA-binding domain, RBD 4 117 IPR035979 GO:0003676
Pste3g03219 207 FunFam Glycine-rich RNA-binding protein RZ1A 1 118 - -
Pste3g03219 207 Gene3D - 119 179 - -
Pste3g03219 207 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 1 204 - -
Pste3g03219 207 FunFam Glycine-rich RNA-binding protein 10 119 177 - -
Pste3g03219 207 SUPERFAMILY Retrovirus zinc finger-like domains 105 142 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03219 Pste-Chr3 24854748 24856535 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03219 9 84 Eukaryotic Initiation Factors Gene Family AT1G22760 38.158 2.21e-07 48.9