Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03206 GCTACTGCTGCTAATTACCATTTCATCTATCACTGTTTTCTTTTCGGAAACTATTACTCCCCCTACTATCTTTATTGCATCATGTCATATCACCATAATTATATTTATAATTATATAGGCCTACAATTCCATTCCTCTTTTTTCAATTAAATTAAATAGATGAAACCTTTGGTTTGGCTGCCTGAGGAATACAATAGCCTTGTTTTTGCTGAATTCTTTAGTTTATAGATAGACAGACTCGGATGAGATCTGAGGGAACCAAAAATATTGAGGTGTTGCAGATATGTGAGTGAGGTTTGATTTTGGCTCAGGGAGAGAAACATCAGCGTCCATAAACAGTGTGGTCTTTAATTGAAGAATCGGTTTTGGCAATGAAGGAAACAGACAAGAGCTTGGATCCGCAACTGTGGCACGCGTGCGCCGGCGGCATGATTCAGATGCCGCCTGTGAACTCCAAGGTCTTCTACTTTCCCCAGGGACACGCGGAGCACGCCCAGTCTAACGTGGATTTGGGAGCTTTGAGGATTCCGATTCCGCCACTCATTCTGTGCCGCGTGGCAGCTGTGAAATTCCTGGCTGACCCCGAAACGGATGAGGTATTCGCAAAGTTGCGTCTGCTTCCTCTCAGAAACTCAGAGCTTGACTGCGAAGACACCGACGCCCTCGACAGTAAAGGTAACGGGTCGGAGAAGCCCGCCTCCTTCGCCAAGACGCTAACTCAATCCGATGCCAACAATGGCGGCGGGTTTTCGGTGCCGCGGTACTGCGCGGAGACGATATTTCCGCGGCTGGATTACTCGGCGGAACCTCCGGTGCAGACGGTGATCGCGAAGGACGTGCACGGCGAGGTGTGGAAGTTCCGGCACATATATCGAGGGACGCCACGTCGGCACTTGCTGACGACCGGTTGGAGCAGTTTCGTGAACCAGAAGAAACTGGTTGCCGGGGATTCAATCGTGTTCCTGAGGGCTGAGAATGGGGATCTTTGCGTGGGGATTCGTAGGGCCAAGAGAGGTGGGGCCGAGGGGCCGTGTGGTTGGAGTGGTGGGCTTGGTCTTGGGCCTGGTCCTGGTCCTTATTGCCCCTTTTCGGCTCCGTTGGTTAGGCCTAAGGTGAGTGGTGATTCTGTGAGGGAGGCTGTTGCTTTGGCTGCCAGTTATCAACCGTTTGAGGTTGTTTATTATCCCCGTGCCAGCACTCCTGAGTTTTGTATTCGTACTTGTGCTGTTCGTGGGGCTATGAGGATTCACTGGTGTTCTGGTATGAGGTTTAAGATGCCCTTTGAGACTGAGGATTCTTCCCGGATAAGCTGGTTCATGGGTACTATAGCTTCTGTTCAGCTTCTTGATCCTATCCGTTGGCCTAATTCTCCTTGGAGGCTTCTTCAGGTTACTTGGGATGAACCCGATTTGCTACATAATGTGAAGCGTGTAAGCCCATGGTTGGTTGAGTTGGTATCAAATGTTCCAATCATCCATCTGGCACCCTTCTCTCCACCGAGGAAGAAGCTTAGGTTTCCACCACACCCAGAGTTTCCCCTTGACGTTCAATTTCCGATACCGACGTTTTCAGGCAACCCCCTTGGGTCTAGCTCTAGCAGCCCCTTGTGTTGTCTATCTGTATCCGATAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGAATATCTTTCTCAGATCTCCACCTTAACAACAATAAGTTGCAGTTGGGGTTGCTTCCCACTAATGTCCACCACCTTAATTTGCATAATGGGATTTCTAATGGCAACATCACCAATCATGGTAAGAGTAAAGAAAGTTTATCTTGCTTGCTCACCATGGGAAATTCACCCAAGAGTTTGGAGAAATCTGATCATGTGAAGAGACACCAATTTTTGCTTTTCGGTCAACCGATACTCACTGAGCAACAGATTTCTAGATCTTCTAGTGATGTGTTTTCTCAAAATTGCACCGCCACTGATGATGAGAATAAGGAAAAGAAGGAGAAGGGGCTTCTTAGTGACTCCCAGTCTTCGGTTTCACCAGGAAAGTCTTCTTCTACCACGGAGTTCTCTTGGCAACTTGGTTTGGACACCAGTCATTGCAAGGTTTTCATGGAGACAGAAGATGTGGGACGGACCCTTGACTTGTCTTGTCTTGGTTCTTATGAAGAGTTGTACATGAGACTGGCCAACATGTTTGGAATAGAACAGTCTCAGATGTTGAGTCATGTTCTCTACCGCGATGCAACCGGTGCTCTTAAGCAAACTGGAGAAGAACCCTTCAGTGAGTTCAGGAAGACAGCAAAAAGATTAACAATTCTGACGGATTCTAGTGGCAAAGATAGTAGAAGGATTTGGATCACAGGAACTCGGAAAACTGAACATGGATTGGATGCATCAAATAAGACAGGTCCTCTGAGTATATTTGCCTAACATGGTGTGGCATGGCTTCTCAGACATTGTTTTTGGATGTGAAAAGTTGAAGGACATAGTTATTACCCTGATGTTAGACAGGCTCCATATGAATGTAACATTCAATCAAAATTGCCGTCTTTGTTTTCCAAGTGTAGAAAGTAAATATTTTCCCTGTGTAATGGACAATTGGTATTCTAATATTAATTAATTAATTAACCAAGATTTGGTTCCCAT 2639 0.4657 MKETDKSLDPQLWHACAGGMIQMPPVNSKVFYFPQGHAEHAQSNVDLGALRIPIPPLILCRVAAVKFLADPETDEVFAKLRLLPLRNSELDCEDTDALDSKGNGSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLRAENGDLCVGIRRAKRGGAEGPCGWSGGLGLGPGPGPYCPFSAPLVRPKVSGDSVREAVALAASYQPFEVVYYPRASTPEFCIRTCAVRGAMRIHWCSGMRFKMPFETEDSSRISWFMGTIASVQLLDPIRWPNSPWRLLQVTWDEPDLLHNVKRVSPWLVELVSNVPIIHLAPFSPPRKKLRFPPHPEFPLDVQFPIPTFSGNPLGSSSSSPLCCLSVSDNAPAGIQGARHAQIGISFSDLHLNNNKLQLGLLPTNVHHLNLHNGISNGNITNHGKSKESLSCLLTMGNSPKSLEKSDHVKRHQFLLFGQPILTEQQISRSSSDVFSQNCTATDDENKEKKEKGLLSDSQSSVSPGKSSSTTEFSWQLGLDTSHCKVFMETEDVGRTLDLSCLGSYEELYMRLANMFGIEQSQMLSHVLYRDATGALKQTGEEPFSEFRKTAKRLTILTDSSGKDSRRIWITGTRKTEHGLDASNKTGPLSIFA 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03206 683 FunFam Auxin response factor 294 367 - -
Pste3g03206 683 Gene3D - 109 213 IPR015300 -
Pste3g03206 683 ProSiteProfiles PB1 domain profile. 571 651 IPR000270 GO:0005515
Pste3g03206 683 MobiDBLite consensus disorder prediction 94 116 - -
Pste3g03206 683 ProSiteProfiles B3 DNA-binding domain profile. 111 213 IPR003340 GO:0003677
Pste3g03206 683 FunFam Auxin response factor 109 213 - -
Pste3g03206 683 Pfam B3 DNA binding domain 111 212 IPR003340 GO:0003677
Pste3g03206 683 SUPERFAMILY DNA-binding pseudobarrel domain 107 212 IPR015300 -
Pste3g03206 683 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 650 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pste3g03206 683 SMART B3_2 111 213 IPR003340 GO:0003677
Pste3g03206 683 MobiDBLite consensus disorder prediction 546 562 - -
Pste3g03206 683 MobiDBLite consensus disorder prediction 523 562 - -
Pste3g03206 683 Gene3D - 294 366 - -
Pste3g03206 683 Gene3D - 569 654 - -
Pste3g03206 683 CDD B3_DNA 110 211 IPR003340 GO:0003677
Pste3g03206 683 Pfam Auxin response factor 256 339 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03206 Pste-Chr3 24751238 24754331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03206 4 649 B3 DNA Binding Superfamily AT4G30080 59.211 0.0 741
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pste3g03206 B3 4.3e-22 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03206 3 24751238 24754331 Pste3g03206 3 24751238 24754331 ECH
Pste3g03206 3 24751238 24754331 Pste1g02643 1 10233155 10236534 PCT