Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03204 ATGTACTGTAGTGTTTTGGAACAGGATATTGCTAATATGAAGGACTCTTGGTTTTTCGACAATAACTTTAATGGTCTGTCAGATGAGATTTTTGATGTCACCAACTTTTTTGATTTCCCATTGGAAGATGTGGATGCTAGTGCCGTGGAAGAAGACTGGAATGTTCAATTAAAAAGCCTTGAAGACCCATGTTCTGAGGTTTTTTCAGCATCATCAGCTGAGCTGTGTGGCAAAACACAAAATGAAAACCCCCAATTTGGGATAAGCTTCTCTGCTTCATGTAATGGGATTTCCCCAATAAAACAGCTGACAATGGCTCCTGGACCAACACATGGAAAAACCATTCCCCACCAGAATTTCACTTTCAGTGGAAAAGATTTGTATCAATTTCAAACCTACAGCCCAGTTTCAGTTTTTGAAAGCAGCAGTTCTTCCTCAGTTGAGAATTCAAACTTTGATCGACCTGTCATACCAGTAAAGCGTGTTCGAAGTAAACGTCAGCGTCCTTCTAGCTTCAGTCCTTTATTTTCAAGTCCTTTCGTCCATAGTTCACCGGCTTTGCAAAAACATCAAAGGGCAGCTGCCTCTGAATCAGATTTGGGAACAAATGTTGCAGGGAATCTATCAAACAAAGTAAAAAGGCAGAGGAAAAAGGATTTGTCCCTGGTATCAGATGATGATGAGATGATGAAATCCTCATCACTGGAGTCAGTTCCCCCCAGAAAATGCATGCATTGTGAGGTGACTAAGACCCCACAATGGAGAGAGGGACCTATGGGTCCCAAAACACTGTGCAATGCTTGTGGTGTTCGATACAGGTCTGGCCGCCTCTTTCCCGAATACCGGCCTGCAGCTAGCCCGACATTTGTAGCATCACTGCACTCAAACTGTCACAAGAAGGTTGTGGAGATGAGAAGCAGAGCCATCCAGGAGGTTGTTAGGGGTTCTATGTTGGCTTCATCAAATCTCCATGGAAATTCTGTAGGATAATTTTTATGTTGGATTGATTATATTGAGGAAACGGTAGCCCTAAACAGGATCCTCCTTGTTTGTTGTTTTCATTATAGTCTAATGTTATATTGCTTAGCATCATTTGTTTTATTAATGTAAATTGATTGTTGAAATAAAAGGTAGTAGCAGGTTAGTGCTTTGCGAGGAATTCGGGGAACATGGCGTTGAAAGTTGGTGAGGTTGAGAATGGTATCATGTAGTTTCATCATGGTGGCGGTGGTTGGTGGATGCAGCCAGCCAGCAATTTTCTAACTGGATAGCATGCATGGCTGTGGGGCTTAACAGTTAAAAGTAGGGGAAAGAATCTTTGCCATTGCTGATGCATGTGCTATGAGAACATAAAGTCAAGGATTAAATTGAGGCAACGACAACAATATCACATGCCTCATAACATGGCACGACATTATAAAGAAAGCACATGCATGCGTGAGACTTTTCTATGTTAGACCTGAGGGCTAGAATAATGCCTTTCTAGTCAGCTTCAAATTGGCTTGATTGCCCTTCATAACAGGCTAGTGAAATTTGTTTCTAGCAGCAATGTTTAAAGGACTGGCCCATACTAAAATCCAATGGTTGTGTGGGCTGGCCTAATTTTTTTAAAAGGTCATTATTTACTTCTTAATTGTTTTGTACTTTTATCTTAATTACAATTTTAATTTTACCAAG 1677 0.4079 MYCSVLEQDIANMKDSWFFDNNFNGLSDEIFDVTNFFDFPLEDVDASAVEEDWNVQLKSLEDPCSEVFSASSAELCGKTQNENPQFGISFSASCNGISPIKQLTMAPGPTHGKTIPHQNFTFSGKDLYQFQTYSPVSVFESSSSSSVENSNFDRPVIPVKRVRSKRQRPSSFSPLFSSPFVHSSPALQKHQRAAASESDLGTNVAGNLSNKVKRQRKKDLSLVSDDDEMMKSSSLESVPPRKCMHCEVTKTPQWREGPMGPKTLCNACGVRYRSGRLFPEYRPAASPTFVASLHSNCHKKVVEMRSRAIQEVVRGSMLASSNLHGNSVG 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03204 329 ProSitePatterns GATA-type zinc finger domain. 243 268 IPR000679 GO:0006355|GO:0043565
Pste3g03204 329 SMART GATA_3 237 287 IPR000679 GO:0006355|GO:0043565
Pste3g03204 329 Pfam GATA zinc finger 243 276 IPR000679 GO:0006355|GO:0043565
Pste3g03204 329 Gene3D - 235 315 IPR013088 GO:0006355|GO:0008270
Pste3g03204 329 MobiDBLite consensus disorder prediction 212 232 - -
Pste3g03204 329 ProSiteProfiles GATA-type zinc finger domain profile. 237 273 IPR000679 GO:0006355|GO:0043565
Pste3g03204 329 FunFam GATA transcription factor 232 319 - -
Pste3g03204 329 CDD ZnF_GATA 242 289 IPR000679 GO:0006355|GO:0043565
Pste3g03204 329 MobiDBLite consensus disorder prediction 186 210 - -
Pste3g03204 329 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 239 298 - -
Pste3g03204 329 PANTHER GATA TRANSCRIPTION FACTOR 48 309 - -
Pste3g03204 329 MobiDBLite consensus disorder prediction 186 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03204 Pste-Chr3 24733474 24737992 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03204 26 307 C2C2-Gata Transcription Factor Family AT1G08000 38.596 2.97e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pste3g03204 GATA 3.7e-16 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03204 3 24733474 24737992 Pste3g03204 3 24733474 24737992 ECH