LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste3g03166	GCAAAGACCATAAAAATTGGGGAGTGCATTAATTAATTAACCCTTTAGGGAGAGGGAGGCAGGTGCTAAGCATATTCGTGTTGAGTTCAGAGCAGTAGCAGGAGCAACAACAGTGCGTCCGTACAATCGGAGAACGGCGATGGATTGGAGGCGGCGATGGAGCAGCAAGAAGCAGCTTTCTCAGCCGCAGCCGCAGCCGCAGCCGCAGCCTCGTTTGGAGCGCCTGAACGCGAGAAAGGGCATCAGTTACCAAGCCCCATCCTCTCCTCCTTCATCTTCTTCTTCCCACTTGGAGCACCAAAGCAGCTTCCGCCTCTCGGGCTTGGACGGCGAATTCGACCGCATCTTCCAGACCTTGGGCCTCTCCGGCCCCGATGACTTATCCATCCCCCCTGCGGACTGGGAGGCCCGCAAGGCCCGCGTTGCCTCCTCCAAGATCCACCATCCCTCCCCTCCTCTTCCCGACCACGCAGTTTCCCTCCCCGTTCCGGCTTCTTCCTCCCCTTGGTCCTCCGGGGACCACGACGCTGCCAGGACCAGTGTCTCTAGATTCCGACTTGGGGAAAGGAGCGTCCTTTTCACTGATTCCGGTTCCTTCACTACTTCCCATGACGATGACAGTGATATTGGCGGGGAAAGATCTTGTTTGGTTTCTAATTCTGCTGCGATTCATCACTTGGTTATTCCTTATGCCTCCTCCAATGAATGGTTCAGACACACTTTCTCTTCCTGGCAGAAAGGTGACGTCTTGGGAAATGGCTCCTTCGGAACCGTCTATGAAGGCTTTACTGACGACGGAGTCTTTTTTGCGGTAAAGGAGGTGTCTTTGCTGGATGAAGGTACCCAGGGAAAACAGAGCATTTTCCAACTTCAGCAGGAAATATCCCTTTTGAGTGAGTTTGATCATGAAAACATAGTTCGATATTTTGGCTCAGACAAGGACAAAAATAAACTATATATCTTCCTTGAGCTTATGCCAAAAGGGTCATTAGCAAGTCTCTATCAAAAGTATCGTTTAAATGATTCTCAAGTTTCTGCATATACAAGGCAAATTTTAAGTGGCTTGAAGTACCTTCATGATCATAATGTGGTCCACAGGGACATCAAGTGTGCTAATATACTAGTAGATGTAAATGGGGCAGTCAAGCTTGCAGATTTTGGGTTGGCAAAGGCAACGAAATTTAATGATGTTAAATCAAGCAAAGGCTCCCCATACTGGATGGCTCCTGAGGTTGTTAACTTAAAGAATCAAGGTGGTTATGGGCTACCAGCTGATATATGGAGTTTAGGGTGTACAGTTTTGGAGATGTTGACAAGGCAGCCTCCTTATTCTGATTTGGAAGGAATGCAAGCATTATTTCGGATTGGCAGGGGTGAACCTCCACCTATTCCTGAGTATTTATCCAAGGATGCCCGAGATTTCGTTCTTGAATGCTTACAAGTTAACCCAAACAAACGCCCAACTGCAGCTGAATTATTTGATCACCCATTTGTAAAGAGAACATTGCTTTCTCCCCTGAGTTTTGCTTCTCCGCATAGGAATATGTATCGGTCATAA	1558	0.4807	MDWRRRWSSKKQLSQPQPQPQPQPRLERLNARKGISYQAPSSPPSSSSSHLEHQSSFRLSGLDGEFDRIFQTLGLSGPDDLSIPPADWEARKARVASSKIHHPSPPLPDHAVSLPVPASSSPWSSGDHDAARTSVSRFRLGERSVLFTDSGSFTTSHDDDSDIGGERSCLVSNSAAIHHLVIPYASSNEWFRHTFSSWQKGDVLGNGSFGTVYEGFTDDGVFFAVKEVSLLDEGTQGKQSIFQLQQEISLLSEFDHENIVRYFGSDKDKNKLYIFLELMPKGSLASLYQKYRLNDSQVSAYTRQILSGLKYLHDHNVVHRDIKCANILVDVNGAVKLADFGLAKATKFNDVKSSKGSPYWMAPEVVNLKNQGGYGLPADIWSLGCTVLEMLTRQPPYSDLEGMQALFRIGRGEPPPIPEYLSKDARDFVLECLQVNPNKRPTAAELFDHPFVKRTLLSPLSFASPHRNMYRS	472

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste3g03166	472	MobiDBLite	consensus disorder prediction	94	128	-	-
	Pste3g03166	472	Gene3D	Transferase(Phosphotransferase) domain 1	196	469	-	-
	Pste3g03166	472	ProSitePatterns	Protein kinases ATP-binding region signature.	204	226	IPR017441	GO:0005524
	Pste3g03166	472	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	317	329	IPR008271	GO:0004672\|GO:0006468
	Pste3g03166	472	Pfam	Protein kinase domain	199	452	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste3g03166	472	MobiDBLite	consensus disorder prediction	1	56	-	-
	Pste3g03166	472	MobiDBLite	consensus disorder prediction	35	56	-	-
	Pste3g03166	472	SUPERFAMILY	Protein kinase-like (PK-like)	181	464	IPR011009	-
	Pste3g03166	472	FunFam	Mitogen-activated protein kinase 1, putative, expressed	196	465	-	-
	Pste3g03166	472	ProSiteProfiles	Protein kinase domain profile.	198	452	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste3g03166	472	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	39	456	-	-
	Pste3g03166	472	SMART	serkin_6	198	452	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste3g03166	Pste-Chr3	24409815	24414515	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste3g03166	140	456	MAP Kinase Kinase Kinase	AT4G08500	61.199	2.52e-131	391

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Pste3g03166		Pkinase	5.3e-69	CL0016