LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste3g03156	CAGAGACTAGACTAGTGACTACATTTCGTATGGTCTCTCTGGCCAGAAAGAAAAGAGGCGGAGACACAAGAACTGCAAATCGTGTATATCTCTCACCGTTTCTTCCACTCGTAAGTGGTAACTTCCCAGATCCTCTTCAATCGTCTTTTCTCTTCGGTGATTGTTACAACTCACAACTCAGCGACCTTATTTGATGGAACAGTACGAGAAGGTTGAGAAGATAGGTGAAGGAACCTACGGCGTCGTTTACAAGGGTCGTGACCGCGTCACCAACGAGACCATCGCATTGAAGAAGGTTCGACTGGAGCAGGAGGATGAGGGGGTTCCCAGCACCGCCATTCGTGAGATTTCTCTCTTGAAAGAAATGCAGCATCGGAACATTGTTAGGTTGCAGGATGTAGTACATGATGAGAAGAGTTTGTATCTGATGTTCCTTTACCAAATTCTCTGTGGCATTGCTTACTGTCACTCACATAGAGTTCTTCATCGAGACTTAAAGCCACAAAATTTGTTGATAGATCGCAGCACTAATGCACTAAAGCTTGCAGATTTTGGATTGGCTAGGGCATTTGGAATTCCTGTTAGGACATTCACACATGAGGTGGTAACACTGTGGTACAGAGCTCCGGAAATTTTGCTTGGATCCCGTCATTATTCTACCCCAGTTGATATTTGGTCAGTTGGATGCATATTTGCAGAGATGGTAAATCAACGACCTCTTTTCCCTGGGGACTCTGAGATTGGTGAATTGTTTAAAATATTCAGAATCTTGGGTACACCAAATGAAGATACGTGGCCTGGAGTCACATCATTGCCAGATTTTAAATCAGCCTTCCCCAAGTGGCAGCCAAAGGACCTGAAAACTGTGGTTCCAAATCTTGAGCCAGCTGGTCTTGATCTTCTTTCTAGCATGCTTTTCTTGGATCCCACCAAAAGAATCACTGCCAGGAGCGCTCTTGAGCATGAATACTTCAGAGACATTAAATTTGTACCCTGATTTCTTACCTTCGAGGCTGACGTGTCTATATTAATGTTTAGCATTTATGCGGTTTGACTCAGACATGTGTGCTATCCTTGCTATTTTCTTCTATGCTTTGGGACTGAATCATATTTCATTTATTTGTTCCCACATATTTACTACAGATTCAGTGAGTGCCACCTCATTACACAATTACCCCTTTCATGTTTTTATTCTCGATGCAATATTTTCAGTTTGTTGATATGCTACATAACTAGTGCTGAGTGTTGCTTTTAAAACAAATAGGTGCTTCCGTTGGTATGGAGCATTTAAAATTGACCTTTCTCGACTGTAGTTTGCTTTTATCTGCCAC	1331	0.4237	MEQYEKVEKIGEGTYGVVYKGRDRVTNETIALKKVRLEQEDEGVPSTAIREISLLKEMQHRNIVRLQDVVHDEKSLYLMFLYQILCGIAYCHSHRVLHRDLKPQNLLIDRSTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDIWSVGCIFAEMVNQRPLFPGDSEIGELFKIFRILGTPNEDTWPGVTSLPDFKSAFPKWQPKDLKTVVPNLEPAGLDLLSSMLFLDPTKRITARSALEHEYFRDIKFVP	267

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste3g03156	267	Gene3D	Phosphorylase Kinase; domain 1	1	80	-	-
	Pste3g03156	267	Pfam	Protein kinase domain	80	260	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste3g03156	267	SMART	serkin_6	4	260	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste3g03156	267	FunFam	Cell division control protein 2 homolog	59	265	-	-
	Pste3g03156	267	PANTHER	CELL DIVISION PROTEIN KINASE	2	81	-	-
	Pste3g03156	267	SUPERFAMILY	Protein kinase-like (PK-like)	1	263	IPR011009	-
	Pste3g03156	267	ProSiteProfiles	Protein kinase domain profile.	4	260	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste3g03156	267	ProSitePatterns	Protein kinases ATP-binding region signature.	10	33	IPR017441	GO:0005524
	Pste3g03156	267	Gene3D	Transferase(Phosphotransferase) domain 1	81	260	-	-
	Pste3g03156	267	CDD	STKc_CDK1_CdkB_like	4	260	-	-
	Pste3g03156	267	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	96	108	IPR008271	GO:0004672\|GO:0006468
	Pste3g03156	267	FunFam	Putative Cyclin-dependent kinase 1	1	83	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste3g03156	Pste-Chr3	24370778	24382825	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste3g03156	1	267	Core Cell Cycle Gene Families	AT3G48750	77.551	5.05e-170	469

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-Pl	Pste3g03156		Pkinase	1.6e-48	CL0016