LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste3g03153	GTGGAAGGGCACAGGAATATTTATTGGAAACCCTAAGTCTGTGGGAGGAGTGTAGATCTATCGTGTTTGTGACCTTTTCCTTTTCCATTTCGAATTCGAATTTGAAGGCAGAGATTGAAGATGGTGTCTGACGCGAGCAAGAAGAAGGCTGCACAGAAGAAGGCGGCGGCAGCGGCCAAGAGAGGAGGCAAAGCGGCAGCTGCTGCTGCTTCATCCAAAACAACGGACAAACTCGCCAATGGAATTGGGGATATTCAAATTTCCGATCGGACCTGCACCGGTGTCCTCTGTTCCCATCCTCTCTCCCGCGATATTAGGATAGAATCTCTGTCAGTTACTTTCCATGGACATGATTTAATAGTTGATTCTGAATTGGAGCTAAATTATGGAAGACGTTATGGCTTACTTGGATTAAATGGTTGTGGAAAATCTACCCTTCTTACGGCAATAGGTTGTCGAGAGCTACCTATTCCTGATCATATGGATATTTATCACCTTACCCGAGAAATTGAAGCCTCTGACATGTCTGCATTGGAGGCCGTTATAAGTTGTGACGAGGAAAGGTTGAGATTAGAGAAAGAAGCTGAAAGTTTGGCAGCTCAGGATGATGGGGGTGGTGAAACTCTTGAACGTATTTATGAACGATTGGAAGCCATTGATGCATCAACTGCAGAAAAGCGTGCTGCTGAAATTTTATTTGGTCTCGGTTTCAACAAGCAGATGCAAGCAAAGAAAACACGTGATTTTTCTGGTGGCTGGAGAATGAGGATTGCTTTAGCACGTGCTCTATTTATGAACCCTACCATTCTTTTACTTGATGAACCCACCAATCACCTGGATTTGGAGGCTTGTGTGTGGTTGGAAGAGAATTTGAAGAAGTTTGACCGAATTCTGGTTGTGGTTTCACACTCTCAGGATTTTCTTAATGGTGTCTGCACAAATATCATCCACATGCAAAACAAGAAACTGAAGCTCTACACTGGTAATTATGATCAATATGTTCAGACACGTGCTGAACTGGAAGAGAATCAGATGAAGCAGTACAAATGGGAGCAGGAGCAAATTGCCTCTATGAAGGAATACATTGCCCGATTTGGTCACGGATCGGCAAAACTTGCTCGCCAAGCCCAGAGTAAAGAGAAAACTCTTGCAAAAATGGAGCGGGGTGGACTCACAGAGAAGGTGGTCAGAGACAAAGTTTTGGTATTCCGCTTTGTTGACGTGGGAAAACTTCCCCCACCCGTCCTCCAGTTTGTTGAGGTGACATTTGGTTACACTCCTGATAATCTGATCTACAAGAACCTTGATTTTGGGGTTGACTTAGATTCTAGGATTGCTCTGGTTGGACCCAATGGAGCCGGGAAGAGTACATTACTGAAGCTAATGACGGGTGATCTGGTACCTATAGATGGCATGGTTCGACGCCACAATCACCTTAGAATCGCACAATTTCACCAGCACTTGGCTGAAAAGCTAGACCTGGAGCTGTCTGCTCTCCAGTTTATGATAAAAGAATACCCTGGAAATGAGGAGGAGAGAATGAGAGCAGCCATTGGAAAATTTGGACTGTCGGGTAAAGCGCAGGTGATGCCTATGAAGAATTTATCTGATGGGCAGAGGAGCCGCGTGATATTCGCATGGTTAGCTTATAGACAGCCTCACTTGCTACTTCTGGATGAGCCAACAAATCATTTGGATATTGAAACAATTGACTCGTTGGCAGAGGCATTGAATGAATGGGATGGTGGCATGGTGCTTGTTAGCCATGATTTTAGGCTTATAAATCAAGTGGCCCATGAGATATGGGTGTGTGCTGATCAAGCTGTGACCAGATGGGAAGGTGACATTATGGATTTCAAGGAGCACCTAAGGTCAAAGGCTGGCTTATCTGACTGAAGAAAATAATGGGGCTGCGACACCGACTGTTGGTCAGCATACCACCATCTAAGAGATTATGTACATGTATTACAATATTGGGAGGGTGTTGCTGCTTCAGGTGGATTTTTCCATGGCGATTATAGGTTAGAAATCATAGTCTTTTTTTTTTTTTTTTTTTTTGAGCCGAGATGTCCTTGTCCCCTTACGATTTGTTGTATTTTATTGTGATTATCAAATTAGTTGCTT	2124	0.4388	MVSDASKKKAAQKKAAAAAKRGGKAAAAAASSKTTDKLANGIGDIQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGCRELPIPDHMDIYHLTREIEASDMSALEAVISCDEERLRLEKEAESLAAQDDGGGETLERIYERLEAIDASTAEKRAAEILFGLGFNKQMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEENLKKFDRILVVVSHSQDFLNGVCTNIIHMQNKKLKLYTGNYDQYVQTRAELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVRDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRIALVGPNGAGKSTLLKLMTGDLVPIDGMVRRHNHLRIAQFHQHLAEKLDLELSALQFMIKEYPGNEEERMRAAIGKFGLSGKAQVMPMKNLSDGQRSRVIFAWLAYRQPHLLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWVCADQAVTRWEGDIMDFKEHLRSKAGLSD	591

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste3g03153	591	PANTHER	ATP-BINDING TRANSPORT PROTEIN-RELATED	14	586	-	-
	Pste3g03153	591	SMART	AAA_5	89	291	IPR003593	GO:0016887
	Pste3g03153	591	SMART	AAA_5	401	589	IPR003593	GO:0016887
	Pste3g03153	591	Coils	Coil	283	303	-	-
	Pste3g03153	591	Pfam	ABC transporter	83	237	IPR003439	GO:0005524
	Pste3g03153	591	CDD	ABCF_EF-3	376	567	-	-
	Pste3g03153	591	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	376	591	IPR003439	GO:0005524
	Pste3g03153	591	FunFam	Abc transporter f family member 1	65	329	-	-
	Pste3g03153	591	Pfam	ABC transporter	276	352	IPR032781	-
	Pste3g03153	591	Pfam	ABC transporter	392	523	IPR003439	GO:0005524
	Pste3g03153	591	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	59	309	IPR027417	-
	Pste3g03153	591	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	359	570	IPR027417	-
	Pste3g03153	591	CDD	ABCF_EF-3	65	282	-	-
	Pste3g03153	591	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	65	305	IPR003439	GO:0005524
	Pste3g03153	591	Gene3D	-	65	329	IPR027417	-
	Pste3g03153	591	ProSitePatterns	ABC transporters family signature.	209	223	IPR017871	GO:0005524\|GO:0016887
	Pste3g03153	591	FunFam	ATP-binding cassette sub-family F member 3	336	590	-	-
	Pste3g03153	591	Gene3D	-	345	589	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste3g03153	Pste-Chr3	24322379	24326299	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste3g03153	196	263	Calmodulin-binding Proteins	AT2G36910	41.429	9.23e-08	53.5

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste3g03153	3	24322379	24326299	Pste3g03153	3	24322379	24326299	ECH
	Pste3g03153	3	24322379	24326299	Pste1g02703	1	10820572	10824181	PCT