Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03149 GTCTCTCTTGTTATAAGGCACACAAGCAGTCCTCTCACCAAAGTTTTGGTAGTGAGAGAGGTTAAGAAGTTCTCATCAGAAAAAGAGAAAATGGGAAGAGCTCCTTGCTGTGACAAGGCAAATGTGAAGAGAGGACCATGGTCACCTGAAGAAGACTCAAAGCTGAAGGAGTACATAGAGAAGCATGGCACAGGAGGGAATTGGATTGCTCTTCCTCAGAAAGCTGGTCTAAAGAGATGTGGAAAAAGTTGCAGATTGAGATGGCTCAACTATCTTAGGCCTAACATTAAGCATGGGGAATTCTCCGACGAGGAAGACAGAATAATTTGCAGCCTTTATGCTAATATTGGAAGCAGGTGGTCAATTATAGCAGCTCAGTTGCCAGGCAGGACTGACAATGATATCAAGAACTATTGGAACACCAAGCTTAAGAGGAAACTCATGGGGTTGCTTCCTGCATCTCATCAAAGAATAGCCCCCTATCAACAATCCTCCTCTCAAAACCCTCCATCATCATTTCCTTCTCACTCACTACCCTCCTCAATCTACAGAGACTACTGTAACAACTCTCATTGTTACATCCCATCACCAACCTCATCTTTCACATGCCTTGAACCATTTTCTGTTCCTTTGAGTAATTACGCAAACACAACAACCTCCACCTCTCTCCCTTTTTACTATAACCAAGAGCCCTTGGTCAATGTTAGTCCCATGCAGTACTACCCCATCACAGATAGTTCCATGCTAGTGTTTGGAAGTGAAACAAGTTGCAGCTCCTCTGATGGAAGCTGCAGTCAAGTTAGCCTTGGCAGAGAGATCAAACAAGAAGACATGGGGTTTCAAAATTTCATGCTTGGAGATCAGCACATGAACAAATTTATGGTTAGTCAAGGCAACATTAATAACGGTGGATGTGAAGAATATGTGAACCAATGGATAGAGAAGCCAAATGGGTGTTTCTTTCAAACGCAAGAAACAAAATTGGATTATGATCTTGACGTTATTAAGCAACTTATTAGTAGTAACAGTAATATTGGGTGCTTGAGTATTGATGAAAACAAGACGGAGGAGAAGGGCGTGTACTACAACTACTGA 1095 0.4219 VSLVIRHTSSPLTKVLVVREVKKFSSEKEKMGRAPCCDKANVKRGPWSPEEDSKLKEYIEKHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFSDEEDRIICSLYANIGSRWSIIAAQLPGRTDNDIKNYWNTKLKRKLMGLLPASHQRIAPYQQSSSQNPPSSFPSHSLPSSIYRDYCNNSHCYIPSPTSSFTCLEPFSVPLSNYANTTTSTSLPFYYNQEPLVNVSPMQYYPITDSSMLVFGSETSCSSSDGSCSQVSLGREIKQEDMGFQNFMLGDQHMNKFMVSQGNINNGGCEEYVNQWIEKPNGCFFQTQETKLDYDLDVIKQLISSNSNIGCLSIDENKTEEKGVYYNY 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03149 364 CDD SANT 46 92 IPR001005 -
Pste3g03149 364 ProSiteProfiles Myb-like domain profile. 93 143 IPR001005 -
Pste3g03149 364 SUPERFAMILY Homeodomain-like 41 139 IPR009057 -
Pste3g03149 364 FunFam Transcription factor MYB36 100 169 - -
Pste3g03149 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 92 IPR017930 -
Pste3g03149 364 ProSiteProfiles Myb-like domain profile. 39 92 IPR001005 -
Pste3g03149 364 PANTHER OS09G0431300 PROTEIN 31 313 - -
Pste3g03149 364 Gene3D - 99 171 - -
Pste3g03149 364 Gene3D - 37 98 - -
Pste3g03149 364 FunFam Transcription factor RAX3 37 98 - -
Pste3g03149 364 SMART sant 43 94 IPR001005 -
Pste3g03149 364 SMART sant 97 145 IPR001005 -
Pste3g03149 364 CDD SANT 100 143 IPR001005 -
Pste3g03149 364 Pfam Myb-like DNA-binding domain 99 141 IPR001005 -
Pste3g03149 364 Pfam Myb-like DNA-binding domain 44 92 IPR001005 -
Pste3g03149 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 93 147 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03149 Pste-Chr3 24248980 24250666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03149 31 149 MYB Transcription Factor Family AT5G57620 89.076 5.08e-77 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste3g03149 Myb_DNA-binding 8.9e-15 CL0123