Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03130 ATGAACGCGATGGATGTTCACCAACACACACTGACTTACATCAATGATTTTGAGCTGTATGACTTTGTTGACGATCCAAATTTTGATCAGTTCATCAATTTGATCCGAGGAGAGAATGAAGATACCAACCGTGACTTCAGTTCTGATCTTATCAATGATTCCTTTGTTAACAATCAGCTCCTTTCATGTCCTGCAAACCCTTTTGATCACAACAATAATAATGCTGCGAATGTCTATGATCCAAGTTCCACATTCAGTTCCTTCTCTTGTTTTGATGGGGAAGTCAAGGGAGAAGGAGAAGGAGAACATGATGGAGAGAATTCTTCTGAAACAACGACAACCACAACAACAACTAGGAATGCTGATGCCAAACCAAAACCAAAAACCGATAGGTCCAAGACTCTCATTTCTGAGAGGAGGAGGAGAGGCCGAATGAAGGAAAAGCTTTACAGATTGCGTTCTTTGGTTCCCAACATAACAAAGATGGATAAGGCTTCTATAATTGGTGATGCAGTATCGTACGTGCATGACCTCCAAGCTCAAGCTAGGAAGCTAAAAGCTGAGGTTGCAGGACTTGAAGCATCCTTATTAGTGTCTGAAAATTATCAAGGATCAATTAACAATCCCAAAAATGTGCACGTGACCAGGAATAGTCATCCAATCTATAAGAAGATTATGCAGGTGGACATAGTTCAAGTGAAGGAAAGAGAGTATTATGCAAAAATAATGTGCAATAAAGGAGCAGGGGTACCTCCTTCACTATACGAGGCTCTTGAGTCTCTTGCAGGTTTTAATGTTCAGAATTCAAACTTGACTACAGTTGGTGACCGTTTTCTACTCACGTTTACATTGAATGTAGAAGGATCTGAACCAGAAATTAACCTACCAAATTTCAAGCTATGGGTGACTGGCGCTCTTCTAAACCAAGGCTTTGAATTCGTGACATCCTTTCCAGACTGA 960 0.4052 MNAMDVHQHTLTYINDFELYDFVDDPNFDQFINLIRGENEDTNRDFSSDLINDSFVNNQLLSCPANPFDHNNNNAANVYDPSSTFSSFSCFDGEVKGEGEGEHDGENSSETTTTTTTTRNADAKPKPKTDRSKTLISERRRRGRMKEKLYRLRSLVPNITKMDKASIIGDAVSYVHDLQAQARKLKAEVAGLEASLLVSENYQGSINNPKNVHVTRNSHPIYKKIMQVDIVQVKEREYYAKIMCNKGAGVPPSLYEALESLAGFNVQNSNLTTVGDRFLLTFTLNVEGSEPEINLPNFKLWVTGALLNQGFEFVTSFPD 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03130 319 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 15 309 - -
Pste3g03130 319 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 127 194 IPR036638 GO:0046983
Pste3g03130 319 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 129 178 IPR011598 GO:0046983
Pste3g03130 319 Gene3D - 120 195 IPR036638 GO:0046983
Pste3g03130 319 SMART finulus 135 184 IPR011598 GO:0046983
Pste3g03130 319 Pfam Helix-loop-helix DNA-binding domain 136 179 IPR011598 GO:0046983
Pste3g03130 319 MobiDBLite consensus disorder prediction 96 143 - -
Pste3g03130 319 MobiDBLite consensus disorder prediction 123 143 - -
Pste3g03130 319 Coils Coil 175 195 - -
Pste3g03130 319 MobiDBLite consensus disorder prediction 108 122 - -
Pste3g03130 319 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 125 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03130 Pste-Chr3 24087265 24088640 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03130 4 311 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 50.000 3.01e-95 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste3g03130 HLH 2.2e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03130 3 24087265 24088640 Pste3g03130 3 24087265 24088640 ECH
Pste3g03130 3 24087265 24088640 Pste1g02735 1 11154518 11156321 PCT