Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03117 ATGGCGAAGGGCACCGATTCCGGCGAGTTCGTGGTGCATTCCAAGGTTCGCACGGGTCTCAAGAGGGAGTTCGCGTTCGCCATGAAGGCCCAATCCGAGATCTGCGGCGCTTCTCTGGGTCGAACCCGAGCCAGCAAAAATCGCCCCGAGCCCCCTGTTCAGACCGCTTCTGCCCGCAAACGGTCCAGGAAATCCGAGGAACCGAAAACCTCAGAGGATGTCATGAGCGAGGAAGAGGCTAAAAGTGATGTGGTGGATCTCCAGAGTGATGACGAGCCAAAAAATAATCACGTTGGAGAATCAGAATCTGTGGCAATGCCGGTTTGTGAAGAGGAACCCAAGAGTGACGTCGTGCTAGAAGCGATTATCAGCGAGGAGGAACCCAAGGTTGTGGAAACTGTTATCAGCGAAGAGGAACCAAAGGTGTTGGAAACTGTTATCAACGAAGAGGAACCAAAGGTGTTGGAAACTGTTATCAGAGAAGAGGAACCCAAGGTTGTGGATTCTGTTATCAACGAAGAGGAACCTGTTCCCAAGATGTTGGATGCTGTAATAAACGAAGAGGAGCCTATTCCGAAGGTGCTAGATGATGTAATCAACGAAAAGGAACCTATTGTGTCTGCGGCGGTGAAAGAAGAGGTTGTGGATGAGATGGCACAGTCCCTTTGTAAAGAGGTGTCGGAGAAGGGTGTTGCGGAAGAGAAAGATCCTAATGGGTCAACCCCAGCTTTGGTTAATGAAGGTGGTAAGGGTAGAAAAAGGAAAAAGCTTTTGGAGAAGCCTCAGTCGGAGAGAAGGTTTACACGGTCGGCATTGAAGGTAAAATCTGAGGAAACAAATGATGGGGAACATGTTGGTGTGGTTGGAATTGATGATGGCGTTAAGAAGGAAACGGAGACTGAGGCTTCGTTGTCCTTGACCACTCCTAGTTCGGCAATATTTTTGAATACTAGGTTGAGGAGGTTTCCTACTAAGTTGAAGGATCTTCTGGCTACCGGGATTCTTGAAGGATTGCCAGTGAAGTACATGAAGGCTTCGAAGACACGTTGGAAAGCTGATGAAAGGGGGCTTCAAGGAGTGATTAAAGGCTCTGGGGTTTTGTGCTTTTGTGGGATTTGTAAAGGGGTTGAGGCTGTCTCGCCTACTGTGTTTGAGCTGCATGCTGGAAGTGCAAACAAGCGACCCCCAGAGTATATTTACATCCAAAATGTGAATTGTGGAAATACCCTCCGTGATGTCATGAATGCCTGCTGCAATTTTCCATTGGAGTCCATGGAGGAAGCCGTCCAAAAGCTCCTTGGTGATTTCACTATGAAAAGATCTTGCATTTGTATGAATTGCAGAGGAGTATTCAAAGGTGTGTCAAAGCTAGTATGTGATTCCTGCTTATCAAGCCCCCCTCAAACAGCCGTGACTGGCAGCAAAAGTATTTCACAACCAGTTCAACCTAGATCACCAGAACCATTTGAGATTCAAAAAGCATTAGACACTGGGATGCAGCCAAATTCGTTAGACACTGGGATGCAGCCAAATTCTTTAGACACTGGGATGCAGACGAATTCTTTAGACAGTGGGATGCATCCAAATTCTTTTGACAATGGGATGCATCCAAATTCATTAGACACTGGGATGCAGACTAATTCATTAGACACTGGGGTGCAGCTTAATTCATTAGGCACTGGGATGCAGCCAAATTCATTAGACACTGGGATGCAGTCAAATTCGTTAAACAATATGATGACACCAAAATCATTTAAGAATGGGATGAAGCACAGTGCATCTCGTGGTAAGAGTCAGGGAAGACTGACTAGGAAGGATCTGCGCTTGCATAAGTTGGTTTTTGAAGCAGATGTTTTGCCAGATGGAACTGAAGTAGCTTACTATGCTCATGGACAGAAACTGCTTGTTGGTTACAAAAAGGGATATGGGATTTTTTGTACCTGCTGCAACTCTGAGGTTAGTGCCTCTCAGTTTGAAGCTCATGCTGGTTGGGCATCTCGACGCAAGCCATACCTTCACATATACACTTCTAATGGAATCTCACTCCATGAGCTGTCCATCTCTTTATCAAAAGATCGGAGGTTTTCCAACAATGATAATGATGATCTCTGCATCATATGTGAAGATGGAGGGGATCTTTTGTGTTGTGATGGATGCCCTAGAGCTTTTCACATAGATTGTGTCCCTTTACCATGCATTCCTACTGGTACTTGGTATTGTAAGTATTGCCAGAATGTTTTCCAGAAAGACAGGCATGGGCAACATAATGTGAACGCCCTGGCTGCTGGAAGGATTGCAGGCACTGATATTTTGGAACAGATGAATCGCAGATGCATTCGCGTTGTCAAAACTGTAGAAGTTGACCATGGTGGATGTGCCTTGTGCAGGTAA 2391 0.4596 MAKGTDSGEFVVHSKVRTGLKREFAFAMKAQSEICGASLGRTRASKNRPEPPVQTASARKRSRKSEEPKTSEDVMSEEEAKSDVVDLQSDDEPKNNHVGESESVAMPVCEEEPKSDVVLEAIISEEEPKVVETVISEEEPKVLETVINEEEPKVLETVIREEEPKVVDSVINEEEPVPKMLDAVINEEEPIPKVLDDVINEKEPIVSAAVKEEVVDEMAQSLCKEVSEKGVAEEKDPNGSTPALVNEGGKGRKRKKLLEKPQSERRFTRSALKVKSEETNDGEHVGVVGIDDGVKKETETEASLSLTTPSSAIFLNTRLRRFPTKLKDLLATGILEGLPVKYMKASKTRWKADERGLQGVIKGSGVLCFCGICKGVEAVSPTVFELHAGSANKRPPEYIYIQNVNCGNTLRDVMNACCNFPLESMEEAVQKLLGDFTMKRSCICMNCRGVFKGVSKLVCDSCLSSPPQTAVTGSKSISQPVQPRSPEPFEIQKALDTGMQPNSLDTGMQPNSLDTGMQTNSLDSGMHPNSFDNGMHPNSLDTGMQTNSLDTGVQLNSLGTGMQPNSLDTGMQSNSLNNMMTPKSFKNGMKHSASRGKSQGRLTRKDLRLHKLVFEADVLPDGTEVAYYAHGQKLLVGYKKGYGIFCTCCNSEVSASQFEAHAGWASRRKPYLHIYTSNGISLHELSISLSKDRRFSNNDNDDLCIICEDGGDLLCCDGCPRAFHIDCVPLPCIPTGTWYCKYCQNVFQKDRHGQHNVNALAAGRIAGTDILEQMNRRCIRVVKTVEVDHGGCALCR 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03117 796 CDD PHD1_AIRE 703 743 - -
Pste3g03117 796 MobiDBLite consensus disorder prediction 228 265 - -
Pste3g03117 796 MobiDBLite consensus disorder prediction 57 98 - -
Pste3g03117 796 ProSiteProfiles Zinc finger PHD-type profile. 701 746 IPR019787 -
Pste3g03117 796 MobiDBLite consensus disorder prediction 466 486 - -
Pste3g03117 796 ProSitePatterns Zinc finger PHD-type signature. 704 743 IPR019786 -
Pste3g03117 796 PANTHER AUTOIMMUNE REGULATOR 58 796 - -
Pste3g03117 796 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 690 783 IPR013083 -
Pste3g03117 796 MobiDBLite consensus disorder prediction 37 111 - -
Pste3g03117 796 Pfam Tify domain binding domain 637 685 IPR032308 -
Pste3g03117 796 Pfam Tify domain binding domain 359 417 IPR032308 -
Pste3g03117 796 SMART PHD_3 703 744 IPR001965 -
Pste3g03117 796 SUPERFAMILY FYVE/PHD zinc finger 691 745 IPR011011 -
Pste3g03117 796 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 690 767 - -
Pste3g03117 796 MobiDBLite consensus disorder prediction 248 265 - -
Pste3g03117 796 MobiDBLite consensus disorder prediction 466 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03117 Pste-Chr3 24015493 24021271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03117 296 795 PHD Transcription Factor Family AT2G36720 38.462 4.12e-102 336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03117 3 24015493 24021271 Pste3g03117 3 24015493 24021271 ECH
Pste3g03117 3 24015493 24021271 Pste1g02745 1 11249208 11257865 PCT