Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03115 GTCGACATTTATGAGTCGTTTCTAAACTCGCAGCTCTTCCCTCTGTCTCACTCTCTACTGTGTCTCTCTTTTTCTTTCTCTGTGATTTTTATTCTGATAATAGGTTACTTTTTCTTTACTCAGAAAGCAAAGGCAGAGAGAGCTTCACTGGGTAAGGTAGAGTTAGCAGTAATTCCTTTCAATTGCAAATTTTGCGAAATTCAGAGTTTGTAGTTATTTTTCTTGACGAGGCTAATACTGAGGATGATGATGGCAGGGAGGGCAAAAGTGGGAAATGTAAGGGCTAATTCTGAGTTCGTTCTATTTGAGTGCATTTGAGTGGGATGGGTTGAAAGATCTGTGTGGTTGTTGTGAAAGTAAATTAGAAATGGCTGTTGCTGGTGTGCATAATGTGACTGTGCTGGAATCTACTTTTCTAAGGGAGTCCCGTTCTCAATCACCTGGGAGGCAAGGCGATGGAGGGAGGGGAGGTGTCCGGTCGTCATCTTCAGTCTTGCAAATGTGGCGAGAGATTGAAGATGAGCAGGTGGTGAGACATGATCAAGGAAGACCAGGGGAGGTGTTACTTCAACAAAGGAGTGATGTGTTGGTTGTGGACCCTTCACAGGAAAACAGGGAAGATATTAGCAACCAGACAGAAAGACACATGCTAGAGGATTCTGTATTGGTTGAGAACGATTCTGAAACCTGGTCACAAAGTCAGAATGAGTTCCATGATGAACAGGAAGAATTAAACAATTCTAGCCCCGAGAACTCCTCTGATTTTGGACAAGTTGAAAGGGAAAGAGTGAGACAAATATTCAGGGAATGGATGAATAGTGGTTCGAGGGATCATGCATCAAATAATTCCCAAGGAAATAATGGTTTAAGAGGAGGATGTGTCGGGGAAACTGAGCAGGAAAGGGTGACTGTCATAAGGGAGTGGGTCCATATGAGTAGCCAACAGAGAGGAGTTTCTTCTGCGGAAAATAGGGAAGAACAATCTTCTGAAACTGGTACCCATATTGAATGTGTTCGGGATGCATTTCTTGTTTATCAGCGAGAGGGCCAAAACCAACCTGAGCATACACGGAGGGGAATCCGTAAATTACGTGGTCGTCAGGTGCTGCTTGATATGCTTAAGAAGGCCCAGATGGAAAGGCAAAAACAAGTTCAGGAATTGTTGGACCATCGGCTTGTATCTCATTTTCCCCATCGTAATCGCATTCAGAGTCTAGGACTTGGTTTGAATCTGAGCATTGCTCTTGCAATTGATAATTGTTTGTTAAAATATTTTCAGGCCTTGCTTAGAGGCAGGTTCTTGAGAAATGATAGATCGATTGATAATAACAGGTCCACTTCCATTGCAGAGAGTGAATTAGGCTTATTGAGACAAAAGCAGACGGTATCAGGTCTAAGGGAAGGATTCTTTTTTAGAAAGGACAATTTTGGTTGCAGTCAAGCAACCAGTAACCTATTTGATATCTCATCCGAGAGTGATATTGATGTTAATGCAATTGAAAAAACTGTTGCCAGCAGTTCACAAGCAGTCCCACCTGTACATTGTGAACAATGTGGGCCTAATAACGAGGGAAGTGACGGACTTGAGATACCAGGTGATCAGATTTGTTCACAAGGAACCACTTGTGAGAATTTAAATTGTCAAGGCTATTGTTCTCATGTAGAAACAAGAGATGGGGAATCATTTTCCGATATAAGGGTTGAAAGAGGAGATGGCACTGGACAAGATGTTGACATGATGCCAACGGAAGATCCTTCTGCTGACGTTACTCAACAAAGCTTGCAAATTGAAGATACAGAGCATGACAATATGCCAGAGTTAAGTGAGGGACATACTGAGGAATCTCAGGGGGGTGATATAACTAATAACGAAAGCAATTTATCAAATCAAGATGATCGTGTATATAGCAATATTGTCGGTGATGTAGATTTGACTGAATCTGTTGCTCTGGAAGTAGAACAGGAAGGGATTATTACTGAAAATGACGGAAGTGAATGGCATCAAAATGTGGATGGTCATCACCTGAGTAGCATAACAAATGAATGGCCTCAAAACATATTGGGAAGCGAAGATGGAGAAAACTCTCGAATGCAAGAGCAAGAAGCCAGTGAAGTGTGGCAAGAGGATGGTGGCTTTCAAGAGGCTGTGGAAATTTGGTTAGGAGGACCTTCTGATAATGAAGTGGCTCCAGTTGGTAGAATTCATGGATTTTATTTTCCTGAAGATGACAACGTATACAGTGTTGAACTCAGGGAATTGCTAAGTAGGAGAAGTGTCTCAAATCTCCTTCGCAGCAGTTTTCGTGAAAGTCTTGACCAGTTGATACAATCGTATGTTGAAAGGCAAGGTCATGCTCACGTGGAATGGGAGCTGCAAGGAACAAACCCTTCTTCTCCATTGGCAGAACAAGACTCGGGGCAACAGAGTAGAGATCCAATTGTTGGTGCTCAGCGTGCTGTTAATAGCTCGCTTGAACGACCCTTGCCACCAACACCTCCGCCTCAGCCTTCGTGGGATCGGCACTCACGTCATGACAATTGGTCACATAATGACATAAATAATCAGCGCCTAGGAATTGTGCGTTCATTTGCGGGACATAACTGCTTTTCTTTAGCTGATGAGTGGGATATTGTTAATGACTTGAGAATTGACATGGTTAGGCTGCAGCAAAGGATGAATAATATGCAGAGGATGCTGGAGGCTTGTATGGATATGCAGCTTGAGTTGCAACGCTCAATAAGGCAAGAAGTCTCTGCAGCCTTAAATCGCTCAACTGGTTCATCAGTCTTAGGTGACCAAGTGAATTTCATCACAGAAATACATGAGCGTGTTCCACCAGACGACAAATCTAAATGGGAATGTGTGAGGAAAGGAGTGTGTTGTATATGCTGCGAAAGCAATATTGATTCTTTGTTGTACAGATGTGGGCACATGTGCACATGTTCGAAATGTGCCAATGATTTGCTCCTAAGTAGAAGAAAGTGTCCAATGTGTAAAGCGCCAGTGGTGGAAGTGATACGAGCTTATTCTATACAATAGTTTTGAGTTTTGACATTAAAGGGTCACACATATAACATAATACAGGTTCCTAACAAGTTCTATCTCCTGGACGTTTCCAGGTTTTTATTATTTTTTTTCTGTTCTTGCCGTGATTACTGTATTTATGTTGAGTGCACCAAAGGAAAACCTGATGGCTCTTTTTGTGGCCGTGATTCTGAAATGAATAAAAGTGTTTTGTTTGACATTTCTTTTTTTATTCTAGACTAGATTTGGATCAAGATCAGAGCGGTTATGTAAATTTGCACCGTTTTCAGCGTATTGTGTGTACTTTGTAGGTTTCTTGATGATCAATAAGCTGAATTTACCGGGCATGGATACAGGAAGTTTCGAGCCGTGATTGTATCTTATTTTGCAC 3416 0.4198 MAVAGVHNVTVLESTFLRESRSQSPGRQGDGGRGGVRSSSSVLQMWREIEDEQVVRHDQGRPGEVLLQQRSDVLVVDPSQENREDISNQTERHMLEDSVLVENDSETWSQSQNEFHDEQEELNNSSPENSSDFGQVERERVRQIFREWMNSGSRDHASNNSQGNNGLRGGCVGETEQERVTVIREWVHMSSQQRGVSSAENREEQSSETGTHIECVRDAFLVYQREGQNQPEHTRRGIRKLRGRQVLLDMLKKAQMERQKQVQELLDHRLVSHFPHRNRIQSLGLGLNLSIALAIDNCLLKYFQALLRGRFLRNDRSIDNNRSTSIAESELGLLRQKQTVSGLREGFFFRKDNFGCSQATSNLFDISSESDIDVNAIEKTVASSSQAVPPVHCEQCGPNNEGSDGLEIPGDQICSQGTTCENLNCQGYCSHVETRDGESFSDIRVERGDGTGQDVDMMPTEDPSADVTQQSLQIEDTEHDNMPELSEGHTEESQGGDITNNESNLSNQDDRVYSNIVGDVDLTESVALEVEQEGIITENDGSEWHQNVDGHHLSSITNEWPQNILGSEDGENSRMQEQEASEVWQEDGGFQEAVEIWLGGPSDNEVAPVGRIHGFYFPEDDNVYSVELRELLSRRSVSNLLRSSFRESLDQLIQSYVERQGHAHVEWELQGTNPSSPLAEQDSGQQSRDPIVGAQRAVNSSLERPLPPTPPPQPSWDRHSRHDNWSHNDINNQRLGIVRSFAGHNCFSLADEWDIVNDLRIDMVRLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSTGSSVLGDQVNFITEIHERVPPDDKSKWECVRKGVCCICCESNIDSLLYRCGHMCTCSKCANDLLLSRRKCPMCKAPVVEVIRAYSIQ 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03115 890 MobiDBLite consensus disorder prediction 103 135 - -
Pste3g03115 890 MobiDBLite consensus disorder prediction 696 724 - -
Pste3g03115 890 Coils Coil 756 783 - -
Pste3g03115 890 Pfam Zinc finger, C3HC4 type (RING finger) 836 882 - -
Pste3g03115 890 MobiDBLite consensus disorder prediction 149 171 - -
Pste3g03115 890 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 890 - -
Pste3g03115 890 MobiDBLite consensus disorder prediction 492 507 - -
Pste3g03115 890 CDD mRING-HC-C3HC5_NEU1 838 887 - -
Pste3g03115 890 MobiDBLite consensus disorder prediction 152 168 - -
Pste3g03115 890 SUPERFAMILY RING/U-box 837 883 - -
Pste3g03115 890 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 818 888 IPR013083 -
Pste3g03115 890 ProSiteProfiles Zinc finger RING-type profile. 838 877 IPR001841 -
Pste3g03115 890 MobiDBLite consensus disorder prediction 17 41 - -
Pste3g03115 890 MobiDBLite consensus disorder prediction 481 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03115 Pste-Chr3 23986328 23991591 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03115 838 884 C3H Transcription Factor Family AT3G06140 40.426 7.04e-07 50.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03115 3 23986328 23991591 Pste3g03115 3 23986328 23991591 ECH
Pste3g03115 3 23986328 23991591 Pste1g02747 1 11290739 11295796 PCT