LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste3g03111	CAAGAGACAACTTCTTAGTTCTTACGTTGTTTTCCCGGCAACAAGACCAACTCAAAAACCCTAATTTCCCATCTCCACCGTTCACTGAATTCAAGGCCTTCTATCGCCTCTACATCACTTCCACATTTATCATCCACAACCACCATTGGTCAAATCGATTCATCCTCTCTTAAAACTTCAACCTGTCTTCCTCATTTTCTTTCTTCTGTTGTCTCAGGGCGGGTTTGGTTCCGAAGGTCCTTCAATGGCGGAGGACCGGAGTGAGATCAGTGATTACAGTTCGGAGGACGAAGGAACGGAAGATTACAGGCGCGGAGGGTACCATGCGGTTCGGATTGGTGACACTTTCAAGAATGGGTGCTATGTGGTGCAGAGCAAACTTGGCTGGGGTCACTTTTCCACTGTTTGGCTCGCCTGGGACACACACAAATCGCAATATGTTGCCTTAAAAATTCAGAAGAGTGCTCAGCATTACACTGAAGCAGCAATGGATGAAATAAAGATTCTCAAACAAATTGCTGATGGGGATCCAGATGACAAGAAATGTGTTGTAAAGCTTTTGGATCATTTTAAGCATTCAGGACCTAATGGCCAGCATGTTTGTATGGTTTTTGAATTCCTTGGGGATAATCTTCTTACACTTATCAAGTATAGTGATTATCGAGGGGTTTCCCTTCCCATGGTCAAGGAAATTTGTTTTCATATTTTGGTGGGTTTGGATTACTTGCATCGTGAGCTTTCTGTAATACACACTGATTTGAAGCCTGAGAATGTATTGCTTTTGTCTCCAATAGATCCATCTAAGGATCCTAGACAATCAAGTGTTCCGCTTATCCTTCCAAACACAAAGGATAATATCGTGACCAAGAATGGGACCACAATAGCAAATAAAAGCTTGAATAGAGATCTAACCAAGAATCAGAAAAAGAAATTACGGAAAAAGGCTAAAAAGGCAGCTCAGGGCTGTGTCGGGAAGGAAAATGTTGGGGAAGCTGAGGAAGATTCCAAAGTACCTGATGAGCAAGATGATTGTAGTAATGATGTGAAACCAGGTGTAGAGTCTGGTGAAGTTAAACCTAATAGTCCTGTTAGTAAAGATGAATCAATGAAGATTTCTGAAAATAACGATATTCCACAAGGAAGTCATGGTAATAGGAGAGGTAGCCGCTCTACAAGAAAGAAATTGCTTGCAACTGTTGATCTAAAGTGCAAGCTGGTTGATTTTGGTAATGCTTGTTGGACCTATAAACAATTCACAAATGATATTCAGACTAGGCAGTATAGGTGTCCTGAGGTTCTTCTTGGATCTAAATACTCAACTCCAGCAGATCTATGGTCCTTTGCTTGCATTTGCTTTGAGCTTGCAACCGGAGATGTTCTTTTTGATCCTCATAGCGGTGACAACTATGATAGGGATGAGGTAAGTGCAGCTGTTTGGACTTCGAAAGAACTGGTTGGCTTCATTTCTTGCCACAATAATCTAATGCTTGGTGATCATCTGGCATTAACGATGGAGCTTCTTGGGATGATGCCTCGCAAGATTGCACTTGGTGGCCGCTATTCCCGTGATTTTTTCAATAGATACGGTGATTTGAGGCACATCCGACGGTTGCGTTTCTGGCCTCTTAACAAAGTGCTGATGGAGAAGTATGATTTCAGTGAACAAGATGCAAATAACATGTCTGACTTCCTTCTCCCATTGCTTGATTTTGTCCCTGAAAAGAGGCCAACTGCTGCACAATGCCTTCAGCATCCATGGTTCAGTGCAGGTCCCCAGACTCTTGAGCCCTCATTGACCATTTTGCAGCATGACACTATTAATGGGGAAATATCTCAAAAGATGCAGAGGGAAAAGACTGAGCAGGAGGCTGTGGAAGTTAGCATGGGGAAGATGGCCATAGATGAAAATCCAAAGCCAATCAATGAGTTCCAATCTATGAAGCCATCGTAATAGAAGCAAATTGGGTGGTGTATGCCTCCTGTTTTTGTTGATATAGGGTAAAGCATGGATGGTCGTTGGAGGGTGATATTATATTTAACTGTGATATTAAGCATTGCGTGTAACAAGGTCATACATGACGTCATTTGGGAAGCCCTTTACTGGGAGCTAGTCACCTATTACTGAACACAATGTCCAAAAGATAGCTTCCATCACATTCAGCAGAAAGCACACTGATATAAGGCTTCTCCCTAGTTTAGATTTTCATCCTTTCAGCACTTCTATGTTTGAGGGCTTTCGAACTGTACATTTTAATGAGTCATTATTTTTTCCTTATGTATCCATATCAGATTTTGTTGCTGTAGACGTTACCAACTGCATCTTCTGTTTCCTAGTTTTTTGTAATTAATGTCTGCTTTAACTTAAAACTGAGCATAGGGTTCAGTATGTAGATGGATATGATCTATTTTGCGGAATCAGTTTCTACAGTTGTTTCTAAGCAGTATATTTGAAATACTTCCAGAACGGTTGTGGAAATCGATTCGAATAAAGGATTTTTAGATCTACATGTAATAACCGTTAAACTGTTACTGTCTAGCAGACTAAGACAATGTGAAAATATTTTTTTTTGAAAATTAATATACAAATGTTTAGGAAAAAAAATTAGTAACTTAAAACTACAGTTGGTTGTTCTGAAAACGTTAGGTGTTAAACTCATTCATCATGTAAAGGAGA	2674	0.4035	MAEDRSEISDYSSEDEGTEDYRRGGYHAVRIGDTFKNGCYVVQSKLGWGHFSTVWLAWDTHKSQYVALKIQKSAQHYTEAAMDEIKILKQIADGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEFLGDNLLTLIKYSDYRGVSLPMVKEICFHILVGLDYLHRELSVIHTDLKPENVLLLSPIDPSKDPRQSSVPLILPNTKDNIVTKNGTTIANKSLNRDLTKNQKKKLRKKAKKAAQGCVGKENVGEAEEDSKVPDEQDDCSNDVKPGVESGEVKPNSPVSKDESMKISENNDIPQGSHGNRRGSRSTRKKLLATVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEVSAAVWTSKELVGFISCHNNLMLGDHLALTMELLGMMPRKIALGGRYSRDFFNRYGDLRHIRRLRFWPLNKVLMEKYDFSEQDANNMSDFLLPLLDFVPEKRPTAAQCLQHPWFSAGPQTLEPSLTILQHDTINGEISQKMQREKTEQEAVEVSMGKMAIDENPKPINEFQSMKPS	568

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste3g03111	568	FunFam	CMGC/SRPK protein kinase	26	125	-	-
	Pste3g03111	568	Pfam	Protein kinase domain	40	179	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste3g03111	568	Pfam	Protein kinase domain	318	506	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste3g03111	568	CDD	STKc_SRPK	29	506	-	-
	Pste3g03111	568	ProSitePatterns	Protein kinases ATP-binding region signature.	46	69	IPR017441	GO:0005524
	Pste3g03111	568	FunFam	Serine/threonine-protein kinase SRPK-like protein	312	506	-	-
	Pste3g03111	568	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	167	179	IPR008271	GO:0004672\|GO:0006468
	Pste3g03111	568	MobiDBLite	consensus disorder prediction	549	568	-	-
	Pste3g03111	568	SMART	serkin_6	40	506	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste3g03111	568	MobiDBLite	consensus disorder prediction	284	304	-	-
	Pste3g03111	568	MobiDBLite	consensus disorder prediction	219	310	-	-
	Pste3g03111	568	SUPERFAMILY	Protein kinase-like (PK-like)	35	518	IPR011009	-
	Pste3g03111	568	Gene3D	Phosphorylase Kinase; domain 1	16	122	-	-
	Pste3g03111	568	ProSiteProfiles	Protein kinase domain profile.	40	506	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste3g03111	568	Gene3D	Transferase(Phosphotransferase) domain 1	123	507	-	-
	Pste3g03111	568	PANTHER	PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED	11	531	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste3g03111	Pste-Chr3	23914553	23920558	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste3g03111	6	553	EF-hand Containing Proteins	AT5G22840	63.702	0.0	705

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_SRPK	Pste3g03111		Pkinase	2.6e-19	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste3g03111	3	23914553	23920558	Pste3g03111	3	23914553	23920558	ECH
	Pste3g03111	3	23914553	23920558	Pste1g02773	1	11484892	11488329	PCT