Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03104 GTGATAACCACAAGAAACCACTTGGCTGGAGGGTGCAATGCAAGACCATCAGTAGCAAAATTTTCCCTCTCTTCTCCCTTTTTTATCTCACAACCCTAACCTCTCACCCAACCCCACACTCTCTCTACCACCTCACACGTCGTTTCGCACGATCCCAACAAACCCTAAACCTTTCACCAAACACCAAAATCTCTCTGAGAAACCGCAGACACAGAGAGTCGCTTCCGATTCGACGATGGATCCTCCCGTCGTGAGATCCAGGGGCCGCCCGCGCAAACGGAGAAGAGAAGAGGATGTAACCGTCGCTGAGGCGAAGAAGAGGCCACCTGTTGCATTGGTAGGTCGATACGTGCTCAAAGAGTTCCGCAGAAACACGGTTCTTCTCGGTAAAGTCGCGCGTTACGAGACTGGATTGTACAGAGTCGTATATGAGAGTGGCAGCTCCGAGGATTTAGATAGCTGCGAGATTCGGAGGATACTTTTACTTGACAGCTATTTCGACGACGATTTAATTCGGAGGAAGATTGAATTGGAGGAATCCGTGTTGCCAAAGATCGCAGAGGAACCGGAGAAAGGTTCCAGAGAATTGCGCGGCGATTTATCAGTTGAGAACGTCGAGGAACCAGATGAGACGGATAACGCCTTGTCCGGTGAGGCTAGGGATTCGAGTTCCGATGCCGATACGTCGCTACTGTCGCCGCCGATGCTGCCGCAGTCTTCTGGAACAATTGGCGTTCCGGAACAGTGCGTTTTGAATCTCTTTTCGGTTTACGGATTTTTACGGTCATTTAGCATTCGTCTATTTCTGAGTCCGTTTACTTTGGACGAGTTTGTCGGCGCTTTAAACTGCAAAGTTTCGAACACATTGCTTGACGCTATTCACGTTTCGCTGATGCGTGTTTTGAAACGTCACCTTGAAAATATTGCACCAGATGGCTCGCGGCGTGCAACAAAATGCCTGAGCTTTTCCTCATCTGTCTCCAATCATACTTACTATGTTCTAGACCATCGTGTGATCGTGGCGTTAGTGAGGTGCAGTGATTGGAATTTGCTCGATGCTTTGACTTGGCCTGTTTTTCTGTTCCAGTATTTAGCAATTTTTGGTTACACAAAGGGACCTGATTGGAAAGGATTTTATGATGAAATCTTTTATGGCGAGTATTATTTATTGCCTGCAAGTAGGAAATTGATGATATTGCAAATTCTCTGTGATGAAGTTTTGGCATCTGAGGAGTTAAAAGCTGAAATGAACATGCGTGAGGAATCAGAGGTTGGGATTGATTATGATAATGAAGATAGCCTTCCTGCTGAAAATGGGCCAAGAAGAGTCCATCCAAGATATTCCAAAACTACTGCCTGTAAGGGTAGTGAAACTAAGAAGTACGTCTCAGAATTGAATGCTGAGGATAGTGATGTGGATGGAAATGGAGATGAATGTCGCTTATGTGGCATGGATGGGACCTTGCTTTGTTGTGATGGTTGTCCTGCTGTTTATCATTCGCGGTGTATTGGTGTGATGAAGATGCATATACCAGAAGGGGCATGGTATTGTCCAGAGTGTAAAATAAATATGATTGGGCCTACGATTGCACAGGGAACTTCACTCAAAGGGGGGGAAGTATTTGGAAAGGATCTTTATGGGCAAGTTTTCATGGGTACTTGTGACCACTTACTGGTTCTCTGTGTCAAAAGTGACAAATTTTGTCTTAAATACTACAATCGGAATAACATTCCTGATGTTCTCCAAGTCCTTTATGCATCTGAACAACATAGACCTATGTACAATGTTATTTGCATGGCAGTGTTAGAATATTGGAATATTCCACAAAGTTTCTTACCCCTTCGTGTCACAATAGGACCACAAGAAAACTCAACTAATACAATGACAGATGTGAAGCTTCCTCGTATGGTTGAAGAAGAGCATAAAGCTGTTAGTTTCCGGAATGAAGAATACAGTTTAATGTTGGCAAATGGGATTTGTGGTGATAATTTGGTGCCATCTCTTGATGCTTCATTGGTTGCAACTCAAAGTCCTGCTCCTGGAAGCAGTGGCAATATAAGAACTACTGTGAATTTGAAGGTTCATGAAGAAACTGTAATAGATTCAATTGTTTCAACTGTTAACCATCAGTCTGACCCAAAGTGTCCAAATTCTGTTAATAGATCAGCTACAGTAAGCCCTGCCAGGTGCACATTGGTTAGCAGGCAATTTAATAATTATGGGCACACAAATGACACAGGGTTACCTATTAATTTGTCTTTGCAAACTAAAGGTGATCAATCTGCTTTTGGAAAGTGCCAAGGCAGTGTAACCAATGATTTTGTGTACATGGGTTACTCCTATAAACCACAGTCATACATTAATTGCTATATGCATGGTGATTTTGCTGCATCTGCTGCTGCTAACCTGGCCGTTCTTTCTTCAGAGGATTCTAGATCTGAGGGTCATGTGTCTAAAGCAACATCTGGAAACACTAGTTTGCTAGCTAAAGCATTCTCCCAAACAGCTTCACGCTTCTTTTGGCCGAGCTCCGAAAAGAAGCTTGTGGAGGTTCCAAGAGAGAGGTGTGGCTGGTGCCTTTCTTGTAAAGCCCTTGTTTCAAGCAAGAAAGGGTGCATGTTAAATCATGCTGCTCTAAGTGCAACCAAATGTGCAATAAAAATCCTTTCTGGTCTTGGTCCTATAAGGAGTGGAGAAGGAATCATCCCTAGTATTGCAACTTATGTTATATATTTGGAGGAAAGTTTACGTGGTTTAATACTTGAGGAGAACATTCGAACTATTGCATTGTGTGGGGACTGGGTGAAGTTGATGGATGATTGGTTGGTTGAATTTTCTACTGTGCAAAGTGCTGCATGCACTCTTGGAACAACACAGAAGCGTGCTACATGTGGTAGGCGTAAGAAACAGTTATCTATCAATAAAGTTACAGCTGGTGTTTGCCATGAAAATTTTACCTGGTGGCACGGTGGAAAATTTGCCAAATCTGTATTTCAGAAAGCTGTTTTGCCAAAATCCATGGTCAGAAAAGCAGCCCGCCAAGGCGGTTTGAGGAAAATTTCGGGTATTTTCTATGCTGATGGCTCTGAGATTCCTAAAAGAAGCAGACAGCTAGTTTGGAGAGCTGCAGTTCAAATGAGTAGAAATGCATCTCAGCTGGCACTTCAGGTCCGGTATCTAGATTTTCATATCAGATGGAATGATCTGATTCGTCCTGATCATAACTTCCAGGATGTGAAAGGCCAAGATACTGAAGCTTCTGCTTACAGGAATGCAAATATTTGTGATAAAAAATTTTCGGAGGGAAAAATTTTGTACAGAGTAGCCTTTGGAAGCCAAAAACATCTTCCTTCTCGGGTAATGAAGAATGTAGAAATAGAGCAAGATCCTGAAGGAAAGGAAAAATATTGGTTTTCTGAAACACGCATTCCTTTATATTTGGTAAAAGAGTATGAAGTACGCAACGGAAAAATGCTATCTGATAAAGAGTACCTGCATATTACATCTCAATTGCACAAAAGGCGGTTGAAAGCTACCTACAAGGACATATTTTTTTACCTTACCTGCAAGCGAGACAAATTGGACATGTTATCATGCTCTGTATGTCAGCTGGGTGTATTAATTGGGAATGCTCTCAAGTGCTGTGCCTGTCAAGGTTATTGTCACGCTGGTTGTTCTGTAAGTTCAACAGTCTCTACATGTGAAGAAGTTGAGTTCTTGGCCACATGCAAGCAATGTCATCATGCCAAATTACTTGCTAAAAAAGAGTCCTGTAATGAATCTCCAACTAGTCCCTTACTCTTACAAGGACAAGAACATAGCACTTCGATTGTTCTGAAGGGGCCAAAGCCTAAATGTGATGGTCAAGGATTGATGTCTACAAGGACGAAGAATAGTCGACTTGACATGAAACAAGTTGCTTCTGATTTCCCTTTGGAAATGAAAGGCCGTAGCAGAAACTGTTCTTGGGGTATTATATGGAAAAAGAAGAATAATGAAGATTCAGGCTTTGATTTCAGGCTAAAGAACATACTTCTAAAGGGAGGTGCAGGCCTGCCTCAATTGGAGCCTGTTTGTCGCTTGTGCCATAAACCATATAGGTCTGATCTAATGTATATTTGCTGTGAAACATGCAAAAATTGGTACCATGCTGAAGCTCTTGAACTTGAAGAGTCCAAACTTTTTGATGTGCTGGGCTTTAAATGTTGCAAGTGTCGCAGGATAAAGTCGCCTGTGTGTCCTTACTCTGATTTGTTTTACAAAACCCAAGAGGGCAAGAGGTCACACTCAAGGGCTTCAAAGAAAGAGCACTTTGGGGCAGATTCTGATTCTGGTACACCTATTGACATGAGAACATGTGAGCCTGCAACTCCTTTCTATTCGGCAGGGGATGCCTCTAGACAAGATTACAATCCTCTTCTGTTCTCCCTTTCAAGTGTTGAGCTGATTACTGAACCCAAGTTAGCTGCAGATCTTGCAAGTAATACTGTTTCTGGGTCAGGGCTTCTGAATTTGCCTAAACATGAGAGGGAGAATTGTGTTTCTTTTAGGGGTAATGTTCATGCTGAGTTTTCAAGAAGCACTGAAATGGTGTCCAAATCTGTAAAAGATTTATCACCTGTAGAATACGGCTTTTCTAACTGCAATCTTCTGAATGACTCTGAAACTGTAAATTATGATGAATTCGTAGATTTTGAACCTCATACGTACTTCTCTCTGACTGAACTGCTGCACTCAGATGATACTAGTCAATTTGGGGAAGCTAATGCATCTGGGCACTTATCAGGTTATTTGAAAAATTCTTGTATATTAGGTGTTCCTGAAGAATGTGGGACTGTTAATTTAGCATCTAATTGTGAGTCTGCAAATTCATTACAAGGAAATGTTAATTGTCGGCAATGCTCACAAAAGGAACCGGCCCCTGATCTTTCTTGTCAGATTTGTGGGATTTGGATTCACAGCCAATGTTCACCCTGGGTTGAATCACCTTCTCGGCTTGGATGTTGGAGATGTGGTGATTGCCGGGAGTGGCGATAGCAGATTTTGTATGTCATCCTGTCCAGTGAGAGTTCTCTCGGGTTGGTAGTAAGATATGGTAATTTGCCAGGAATGGCGATTGCATGAGTTGAATCAAACAAGCTGGCTAGTATGTGTGCATTGATGATTGGATCTGGAATGAGTTGAATCCATTGCCGTGGAACTTTGAGGTTAACTGACCGCTGCAGATTGCTATGAATGTTTTCTTTAGTGCTTAAATGATTGCAGCTTCGCCGCAGCTGATAGTCTGAGAAATTTTGAGTTCCGACATGTTTCCAACCTGCGGACCCTGGAACCATATAGGTTTATACTCCTCGGCTACATTGTCCCAGGATTCTCATACGAATTTGCTCTGATAATGGAAGATAAGCAGATTTTTATGTTGCTTATCTGGCTGAATTATCTGTATAGATTCATATTTTTTAGGAGGTCGGCCAAAATTGAAACCGTCACCTTTTAGGATCTTAGCTGAAGCTGTGAGTGCCTCGTGAGCTTCCCTTTTCCCCGCCCCCCGCCAAAAGTCATTCTTTAACACTAAAGTGTGCAAGCGCTTTCCTCTGCATATTATTCACTCCCTAGGTTCCTAACACTCTCTGCTATACTAATTAATATAGGCTTTTGTGAGTTTAGTGTTTTCCCAAGTTTATTTACATTTCGTCTTCTAATACAGGGACAGGGAATATGTGAATTGTCTATAATTTATTTCAAAAATTAACATTTCAA 5761 0.4213 MDPPVVRSRGRPRKRRREEDVTVAEAKKRPPVALVGRYVLKEFRRNTVLLGKVARYETGLYRVVYESGSSEDLDSCEIRRILLLDSYFDDDLIRRKIELEESVLPKIAEEPEKGSRELRGDLSVENVEEPDETDNALSGEARDSSSDADTSLLSPPMLPQSSGTIGVPEQCVLNLFSVYGFLRSFSIRLFLSPFTLDEFVGALNCKVSNTLLDAIHVSLMRVLKRHLENIAPDGSRRATKCLSFSSSVSNHTYYVLDHRVIVALVRCSDWNLLDALTWPVFLFQYLAIFGYTKGPDWKGFYDEIFYGEYYLLPASRKLMILQILCDEVLASEELKAEMNMREESEVGIDYDNEDSLPAENGPRRVHPRYSKTTACKGSETKKYVSELNAEDSDVDGNGDECRLCGMDGTLLCCDGCPAVYHSRCIGVMKMHIPEGAWYCPECKINMIGPTIAQGTSLKGGEVFGKDLYGQVFMGTCDHLLVLCVKSDKFCLKYYNRNNIPDVLQVLYASEQHRPMYNVICMAVLEYWNIPQSFLPLRVTIGPQENSTNTMTDVKLPRMVEEEHKAVSFRNEEYSLMLANGICGDNLVPSLDASLVATQSPAPGSSGNIRTTVNLKVHEETVIDSIVSTVNHQSDPKCPNSVNRSATVSPARCTLVSRQFNNYGHTNDTGLPINLSLQTKGDQSAFGKCQGSVTNDFVYMGYSYKPQSYINCYMHGDFAASAAANLAVLSSEDSRSEGHVSKATSGNTSLLAKAFSQTASRFFWPSSEKKLVEVPRERCGWCLSCKALVSSKKGCMLNHAALSATKCAIKILSGLGPIRSGEGIIPSIATYVIYLEESLRGLILEENIRTIALCGDWVKLMDDWLVEFSTVQSAACTLGTTQKRATCGRRKKQLSINKVTAGVCHENFTWWHGGKFAKSVFQKAVLPKSMVRKAARQGGLRKISGIFYADGSEIPKRSRQLVWRAAVQMSRNASQLALQVRYLDFHIRWNDLIRPDHNFQDVKGQDTEASAYRNANICDKKFSEGKILYRVAFGSQKHLPSRVMKNVEIEQDPEGKEKYWFSETRIPLYLVKEYEVRNGKMLSDKEYLHITSQLHKRRLKATYKDIFFYLTCKRDKLDMLSCSVCQLGVLIGNALKCCACQGYCHAGCSVSSTVSTCEEVEFLATCKQCHHAKLLAKKESCNESPTSPLLLQGQEHSTSIVLKGPKPKCDGQGLMSTRTKNSRLDMKQVASDFPLEMKGRSRNCSWGIIWKKKNNEDSGFDFRLKNILLKGGAGLPQLEPVCRLCHKPYRSDLMYICCETCKNWYHAEALELEESKLFDVLGFKCCKCRRIKSPVCPYSDLFYKTQEGKRSHSRASKKEHFGADSDSGTPIDMRTCEPATPFYSAGDASRQDYNPLLFSLSSVELITEPKLAADLASNTVSGSGLLNLPKHERENCVSFRGNVHAEFSRSTEMVSKSVKDLSPVEYGFSNCNLLNDSETVNYDEFVDFEPHTYFSLTELLHSDDTSQFGEANASGHLSGYLKNSCILGVPEECGTVNLASNCESANSLQGNVNCRQCSQKEPAPDLSCQICGIWIHSQCSPWVESPSRLGCWRCGDCREWR 1600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03104 1600 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 376 448 IPR013083 -
Pste3g03104 1600 SMART testlast3 169 229 IPR018501 -
Pste3g03104 1600 ProSiteProfiles DDT domain profile. 169 229 IPR018501 -
Pste3g03104 1600 MobiDBLite consensus disorder prediction 114 155 - -
Pste3g03104 1600 SUPERFAMILY FYVE/PHD zinc finger 368 444 IPR011011 -
Pste3g03104 1600 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 302 339 IPR028942 -
Pste3g03104 1600 ProSitePatterns Zinc finger PHD-type signature. 401 442 IPR019786 -
Pste3g03104 1600 SMART PHD_3 400 443 IPR001965 -
Pste3g03104 1600 SMART PHD_3 1552 1597 IPR001965 -
Pste3g03104 1600 SMART PHD_3 1280 1328 IPR001965 -
Pste3g03104 1600 SMART PHD_3 1120 1169 IPR001965 -
Pste3g03104 1600 SUPERFAMILY FYVE/PHD zinc finger 1277 1334 IPR011011 -
Pste3g03104 1600 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1276 1334 IPR013083 -
Pste3g03104 1600 PANTHER PHD FINGER FAMILY PROTEIN 265 1564 - -
Pste3g03104 1600 Pfam PHD-finger 401 443 IPR019787 -
Pste3g03104 1600 CDD PHD_SF 1280 1327 - -
Pste3g03104 1600 MobiDBLite consensus disorder prediction 1 23 - -
Pste3g03104 1600 Pfam DDT domain 170 225 IPR018501 -
Pste3g03104 1600 ProSiteProfiles Zinc finger PHD-type profile. 398 445 IPR019787 -
Pste3g03104 1600 MobiDBLite consensus disorder prediction 139 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03104 Pste-Chr3 23815566 23824121 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03104 282 540 EF-hand Containing Proteins AT5G22760 46.619 1.41e-72 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Pste3g03104 DDT 1.2e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03104 3 23815566 23824121 Pste3g03104 3 23815566 23824121 ECH
Pste3g03104 3 23815566 23824121 Pste1g02790 1 11568061 11582275 PCT