Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03102 TGTGGCGGGAAGACGACCACGTGCGTCTCGCGTGAGATCCCGCCAAGTAACAGTAACCCATCACTTCACTTCACTTCACTATGTGCTATTTCCTTTTGGTTTCTTGATCTTCAATTTTCCAAATATTTGGCGCGAAATCAGAAACTTAGGGTTAGGGTTCCGATGGGGAGCAAGGTGAGCGACCACCACTTATCCACCGTCCGATCCATCAGCCCTACACATGGCCAAAAACGACGTCACTGCAGCCATCAACATCATATTCGACACTCACACCGCCCCGAAATTGAAGCCCACGCGCCCCACAATCCCCAACCAGTTTCTCCTCCAAAACCGACCGCTCCGGCTCCGGCTCCCACTCCCACTCCCACTCCCACGCCCACTGTCATCCTCAACTCAAAGCGTAGTGCAGGTGAACGACACGGCGATAATAGCCACGATGATTGGTGGTTTGTGGGTTGTGGAGAAATGACGGGTTTGTCCACGTGTAAAGGGAGGACTTTAAGCTCCGGCGAGACGGTGGTTTTCAAGTTTCCGGCAAAGACGCTCCCTGCTTCGCCCTCTCCGGGGAAGGGGTTCGGACGGGCTTCGCCTTGTTCTGAGATAGTTAGGATTGAGGGGCAGTGTAAATTCGCCCCCAAAGTTTTAGGCATCATGGACTCCATTGTTTTGTCAGTGAGTATATTTATCAATAGTTCGATGTTTGGTAAGCATCACCAGGTTTCTCTCAAGGATGCAACCAACTCCACCGATGAATCAGTCTTTCATCCAGTTCATTCTTTGTTTAGGTTGCTTGGCCTAAACCCTTTTAAGAAGGCAGAGTTAACTCCTGATGATTTCTATTCCAACAAGCGTCCTCTCAGTCAAAGGGTGACATTACCACGGGTTAAATCTGAGCATCCTTCTCAAAATGGTCATGAGAATGACAATGAGGATTCCATTTCTGAAATTGATGTTGAGAACATTGTTGGTGTTGGATCAAGCTCAGAGTTAGAGGAAATGGACCCCCCTGGTAATCTTATGTGTGAACTGCGGCCTTATCAAAAGCAGGCGCTTTATTGGATGATCCAGATGGAGAAGGGACAATCTATGGATGAGACAGCAACAGCCCTCCATCCATGTTGGGAGGCGTATCACCTGGCTGACAAGAGGGGGCTTATTATCTATTTGAATGCATTTTCGGGAGAAGCCACAATAGAATTTCCTAGCACCCTTCAAATGGCCAGAGGAGGAATTTTGGCAGATGCTATGGGCCTTGGAAAGACCATCATGACCATATCCCTTCTTGTTGCCTATTCAGGCAAGGGTGGATCAATAGGCAGTCAACCCATAACCCAATCCTTTATAGAAGGCAGTAAAGTTAGTGATACTGTACATAATATTTCAAACATACCCAAGAAGGCAACCAAATTTGCTGGTTTTGATAAACTGATGAAGCAAAAGAATGCTTTAACAAGTGGTGGCAACTTGATAATATGTCCCATGACTCTTCTTGGGCAATGGAAGGCAGAGATTGAAGCTCATGTGCACCCCGGGTCTTTGTCTCTATATGTTCACTATGGACAAAGTAGGCCAAAAGATGCAAAAAGTCTTGCCCAAAGTGATGTTATAATTACTACTTATGGAATTTTGGCCTCTGAATTTTCCAGCGAGAACGCAGAGGCTAATGGTGGACTCTTCTCTATTCGGTGGTTTAGAGTGGTTCTTGATGAAGCACACACCATAAAATCTTCTAAAAGCCAAATTTCTATGGCAGCTTCTGCTCTAATTGCTGACAGACGTTGGTGTCTAACAGGCACTCCAATTCAGAACAGCCTTGAGGATATTTACAGTCTTCTACGGTTTCTGAGAATAGAGCCTTGGGGTCATTGGGCATGGTGGAACAAACTTGTTCAGAAACCATTTGAGGGTGGTGATGAAAGAGGGCTGAAGTTAGTTCAATCAATTTTGAAGCCAATCATGTTGAGGAGAACCAAAAATAGCACAGATCGAGAGGGCAAACCCATCCTAGTTCTCCCTCCAGCTGATATGCAGGTAATTTACTGTGAACCCTCAGAAGCTGAAAAGGACTTTTACGAAGCCCTATTCAAAAGATCTAAGGTAAAATTTGATCAGTTTGTTGAGCAAGGGCGCGTTCTTCATAATTATGCTTCAATATTGGAATTACTTTTACGTCTTCGGCAATGTTGTGATCACCCATTTCTTGTAATGAGTCGAGGTGATACTCAAGAATTTGCGGATCTAAACAAACTAGCTAAGCGCTTCCTTAGAGGAACCTACAGTGCTTCAGAAGGTGAAGTAAAAGATGCACCTTCACGGGCTTATGTTCAAGAAGTTGTGGAAGAGCTACGTAAAGGGGAGCAAGGAGAGTGTCCAATATGTCTTGAAGTATTTGAAGATGCAGTGTTAACGCCTTGTGCTCACCGCTTATGCCGGGAATGCCTCTTGTCAAGTTGGCGAAATGCTACTACTGGCTTATGTCCTGTTTGTAGGAAAACAATCAGCAGGCAGGATCTTATCACTGCCCCTACTGAGAATCGGTTTCAGGTGGATATTGAGAAGAACTGGGTAGAGTCTTGCAAGGTAACTGTTCTTTTGAATGAACTTGAAAATCTCTGCTCATCAGGCTCCAAAAGCATTGTTTTCAGCCAGTGGACTGCTTTTCTAGACCTCTTGCAGATTCCCTTTGCTCGGAATAACATTTCATTTGTTCGTCTTGACGGGACTCTGAATCAGCAGCAGCGGGAAAAAGTAATCAAGCAATTCTCTGAAGACAGCAACACCCTGGTGTTGTTAATGTCACTAAAAGCTGGTGGAGTAGGTATAAACCTAACAGCAGCTTCTAATGCTTTTGTCATGGACCCATGGTGGAATCCTGCTGTTGAGGAACAAGCTGTTATGCGCATTCATCGAATTGGACAAACAAAGAAGGTTGCCATTAGACGGTTTATTGTGAAGGGGACAGTTGAGGAGAGAATGGAGGCAGTGCAAGCACGTAAACAACGAATGATTTCTGGTGCCTTGACTGATCAAGAAGTTCGAACTGCAAGGATTGAGGAGTTGAAGATGCTTTTTACTTAGACCACTGAGGCAGTGTAAAATAGTTTGGTTGCTGTTAGGGTGCACCGGCATTTTCGCAAATTTTGCATCCCCTGGCTTTCTTTTGTTCTCAAGTGCTGGTGACTGGCGAGTGCAAGGTAGTTGTGACTAACATGAAGG 3216 0.4521 CGGKTTTCVSREIPPSNSNPSLHFTSLCAISFWFLDLQFSKYLARNQKLRVRVPMGSKVSDHHLSTVRSISPTHGQKRRHCSHQHHIRHSHRPEIEAHAPHNPQPVSPPKPTAPAPAPTPTPTPTPTVILNSKRSAGERHGDNSHDDWWFVGCGEMTGLSTCKGRTLSSGETVVFKFPAKTLPASPSPGKGFGRASPCSEIVRIEGQCKFAPKVLGIMDSIVLSVSIFINSSMFGKHHQVSLKDATNSTDESVFHPVHSLFRLLGLNPFKKAELTPDDFYSNKRPLSQRVTLPRVKSEHPSQNGHENDNEDSISEIDVENIVGVGSSSELEEMDPPGNLMCELRPYQKQALYWMIQMEKGQSMDETATALHPCWEAYHLADKRGLIIYLNAFSGEATIEFPSTLQMARGGILADAMGLGKTIMTISLLVAYSGKGGSIGSQPITQSFIEGSKVSDTVHNISNIPKKATKFAGFDKLMKQKNALTSGGNLIICPMTLLGQWKAEIEAHVHPGSLSLYVHYGQSRPKDAKSLAQSDVIITTYGILASEFSSENAEANGGLFSIRWFRVVLDEAHTIKSSKSQISMAASALIADRRWCLTGTPIQNSLEDIYSLLRFLRIEPWGHWAWWNKLVQKPFEGGDERGLKLVQSILKPIMLRRTKNSTDREGKPILVLPPADMQVIYCEPSEAEKDFYEALFKRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQEFADLNKLAKRFLRGTYSASEGEVKDAPSRAYVQEVVEELRKGEQGECPICLEVFEDAVLTPCAHRLCRECLLSSWRNATTGLCPVCRKTISRQDLITAPTENRFQVDIEKNWVESCKVTVLLNELENLCSSGSKSIVFSQWTAFLDLLQIPFARNNISFVRLDGTLNQQQREKVIKQFSEDSNTLVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKKVAIRRFIVKGTVEERMEAVQARKQRMISGALTDQEVRTARIEELKMLFT 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03102 1025 MobiDBLite consensus disorder prediction 290 316 - -
Pste3g03102 1025 CDD SF2_C_SNF 856 983 - -
Pste3g03102 1025 ProSiteProfiles Zinc finger RING-type profile. 790 830 IPR001841 -
Pste3g03102 1025 SMART ultradead3 339 640 IPR014001 -
Pste3g03102 1025 SUPERFAMILY RING/U-box 778 836 - -
Pste3g03102 1025 Pfam SNF2-related domain 346 734 IPR000330 GO:0005524|GO:0140658
Pste3g03102 1025 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 860 1025 IPR001650 -
Pste3g03102 1025 Gene3D - 672 1025 IPR027417 -
Pste3g03102 1025 ProSitePatterns Zinc finger RING-type signature. 805 814 IPR017907 -
Pste3g03102 1025 Pfam Helicase conserved C-terminal domain 861 972 IPR001650 -
Pste3g03102 1025 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 668 1014 IPR027417 -
Pste3g03102 1025 Gene3D - 401 668 IPR038718 -
Pste3g03102 1025 MobiDBLite consensus disorder prediction 73 88 - -
Pste3g03102 1025 Pfam Zinc finger, C3HC4 type (RING finger) 790 829 IPR018957 GO:0046872
Pste3g03102 1025 MobiDBLite consensus disorder prediction 102 125 - -
Pste3g03102 1025 SMART ring_2 790 829 IPR001841 -
Pste3g03102 1025 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 329 656 IPR027417 -
Pste3g03102 1025 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 142 1025 - -
Pste3g03102 1025 FunFam DNA repair protein RAD5B 398 657 - -
Pste3g03102 1025 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 751 854 IPR013083 -
Pste3g03102 1025 MobiDBLite consensus disorder prediction 69 130 - -
Pste3g03102 1025 SMART helicmild6 889 972 IPR001650 -
Pste3g03102 1025 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 401 618 IPR014001 -
Pste3g03102 1025 CDD DEXDc_SHPRH-like 343 656 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03102 Pste-Chr3 23792425 23802043 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03102 55 1025 RAD5 or RAD16-like Gene Family AT5G22750 67.017 0.0 1377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pste3g03102 SNF2_N 1.5e-85 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03102 3 23792425 23802043 Pste3g03102 3 23792425 23802043 ECH