Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03092 CCCTCCATTGCACATCACTTTGAAAGTGAGAAAGATATTAGCGTTATAGGTGTTGGTTCATTAAAAGTAGTATCATAGTGATTGTTGAAGATGGAGGAACACGAGAATGGTGGCAACGGAAGCGAGGAGGAACAGTTGATAGGGCCGGGCCCAGCTCCTCGGGCTCGTCCCAAGCGACCCCTTCAGTTCGAGCACGCATACCTCGACGCCTTACCCTCTGCCAACATGTACGAGAAAAGTTATATGCACCGCGATGTCGTTACGCATGTCGCTGTTTCAGCTGCTGACTTTTTCATCACTGGAAGTGCCGATGGGCACTTGAAGTTTTGGAAGAAAAGGCCTATTGGTATTGAGTTTGCCAAACACTTCAGATCTCATTTAGGTCCAATTGAAGGTCTAGCTGTTAGTATTGATGGTTTGCTTTGCTGTACAATATCAAATGACCGCTCTGTGAAGATATATGATGTAGTCAACTTTGATATGATGGTCATGATTCGCTTGCCATATGTTCCTGGTGCTATTGAATGGGTTTATAAACAAGGGGATGTCAAAGCTAGGCTTGCCATTAGTGACAGGAACTCATCTTTTGTGCACATATATGATGCACGGGCTGGTTCAAATGATCCCATCATCTCCAAAGAGATACATATGGGTCCTATTAAAGTTATGAAGTACAATCCTGGAAGTGATTCTGTACTTTCGGCTGATGCAAAGGGGATAATTGAATACTGGAGTCCTGCTACACTTCAATTCCCAGAAAATGAGGTCAATTTTAAACTGAAAAGTGACACTAACCTCTTTGAAATTGCAAAATGCAAGACTTCTGTTTCGGCTATTGAGGTTAGTCCAGATGGTAAACAGTTTTCCATTACGTCACCGGACCGTAGGATACGTGTGTTTTGGTTCAGAACAGGTAAGCTAAGGCGAGTTTATGACGAATCCTTGGAGGTTGCCCAAGATCTGCAAAGAAGTGATGCTCCATTATACAGGTTGGAAGCCATTGATTTTGGTCGAAGAATGGCTGTTGAGAGGGAAATAGAGAAGACCGAAAGTGCACCACTTCCAAATGCAGTTTTTGATGAAAGTTCCAATTTTCTTATATATGCTACCTTGCTTGGGATTAAAGTTGTTAATCTGCACACCAATAAAGTTGCTCGAATACTTGGAAAGGTGGAGAATAACGATAGGTTCTTAAGAATAGCTTTATATCAAGGTGATCGAAGTAGCAAAAAAGTAAGAAAGATCCCTTCAGCAGCTGCAAATGCTAATGAGAGCAAGGAGCCTTTGACAGATCCCACTCTCCTGTGTTGTGCCTTCAAAAAGCACAGGATATATTTATTCAGTCGAAGAGAGCCCGAGGAGCCTGAAGATGCTACAAAAGGAAGAGATGTGTTCAATGAAAAGCCACCTGCTGATGAACTTTTGGCAATTCTGCACACCACTATGGGTGATATTCACATGAAATTATACCCAGAGGAATGTCCAAAAACTGTGGAGAATTTCACAACACACTGCCGAAATGGCTACTATGACAATCTTATTTTTCATAGGGTCATCAAAGGCTTCATGATACAAACAGGAGATCCTTTAGGTGATGGCACTGGTGGGCAGTCTATTTGGGGGAGAGAATTTGAGGATGAATTTCATAAAAGTTTGAGGCACGATAGGCCTTTCACTGTATCAATGGCTAATGCCGGCCCAAATACAAACGGATCTCAGTTCTTTATCACCACGGTGGCTACTCCATGGTTGGACAACAAGCACACTGTGTTTGGTAGAGTTGCAAAGGGAATGGATGTTGTTCAGGCTATAGAAAAAGTGAAGACAGACAAGACAGATAAGCCATATCAAGATGTTAAAATTCTAAATGTCACTGTACCAAAATCTTAGGGTTTAGGGTTTGTATGGCTGACGGAAGCAGATATATCCATACTGGTGATACCTGGCGGAAGAAGTTTGAACAGGATGATTTCAAGTTTACCTTTAACTTCATAGGTTTCCTATGAAATGAGGCAATTATTCTTAACAAGATGGCCGTTGATTTTCATGCTTACACTTTCTTCACAAGTCTGACAAAACAGCTTACCGATGCTGTCATCTGTTTCCTGCTTTGCATGCTAAGGGGATACAATTGGGCAATATCACTTCTTGACGGAAATTTTTTTCTGATACTATACCTGATTTACGATATTCCTGAATTATTATATTTTTTTAAATGTTGTGGAGATTGTTTTGATGAAAAGCAGATTTCTAAAACTTTCGATGTGAACTTCTGAATTAGGAAACACAAATTCAAGGTTGCAGCAATAAATTATTTTGCTTAAAA 2326 0.4084 MEEHENGGNGSEEEQLIGPGPAPRARPKRPLQFEHAYLDALPSANMYEKSYMHRDVVTHVAVSAADFFITGSADGHLKFWKKRPIGIEFAKHFRSHLGPIEGLAVSIDGLLCCTISNDRSVKIYDVVNFDMMVMIRLPYVPGAIEWVYKQGDVKARLAISDRNSSFVHIYDARAGSNDPIISKEIHMGPIKVMKYNPGSDSVLSADAKGIIEYWSPATLQFPENEVNFKLKSDTNLFEIAKCKTSVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEREIEKTESAPLPNAVFDESSNFLIYATLLGIKVVNLHTNKVARILGKVENNDRFLRIALYQGDRSSKKVRKIPSAAANANESKEPLTDPTLLCCAFKKHRIYLFSRREPEEPEDATKGRDVFNEKPPADELLAILHTTMGDIHMKLYPEECPKTVENFTTHCRNGYYDNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVAKGMDVVQAIEKVKTDKTDKPYQDVKILNVTVPKS 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03092 599 Pfam WD domain, G-beta repeat 57 81 IPR001680 GO:0005515
Pste3g03092 599 Pfam WD domain, G-beta repeat 91 125 IPR001680 GO:0005515
Pste3g03092 599 Gene3D - 145 311 IPR015943 GO:0005515
Pste3g03092 599 ProSiteProfiles Trp-Asp (WD) repeats profile. 50 81 IPR001680 GO:0005515
Pste3g03092 599 Gene3D - 427 597 IPR029000 -
Pste3g03092 599 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 528 543 IPR002130 GO:0000413|GO:0003755
Pste3g03092 599 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 556 571 IPR002130 GO:0000413|GO:0003755
Pste3g03092 599 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 459 474 IPR002130 GO:0000413|GO:0003755
Pste3g03092 599 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 485 497 IPR002130 GO:0000413|GO:0003755
Pste3g03092 599 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 543 555 IPR002130 GO:0000413|GO:0003755
Pste3g03092 599 SUPERFAMILY WD40 repeat-like 45 359 IPR036322 GO:0005515
Pste3g03092 599 FunFam Peptidylprolyl isomerase domain and WD repeat-containing 1 429 597 - -
Pste3g03092 599 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 445 596 IPR002130 GO:0000413|GO:0003755
Pste3g03092 599 FunFam Peptidyl-prolyl cis-trans isomerase, putative 41 437 - -
Pste3g03092 599 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 447 596 IPR002130 GO:0000413|GO:0003755
Pste3g03092 599 CDD cyclophilin_WD40 447 594 - -
Pste3g03092 599 SMART WD40_4 176 215 IPR001680 GO:0005515
Pste3g03092 599 SMART WD40_4 232 271 IPR001680 GO:0005515
Pste3g03092 599 SMART WD40_4 86 125 IPR001680 GO:0005515
Pste3g03092 599 SMART WD40_4 44 81 IPR001680 GO:0005515
Pste3g03092 599 Gene3D - 39 144 IPR015943 GO:0005515
Pste3g03092 599 MobiDBLite consensus disorder prediction 1 28 - -
Pste3g03092 599 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 445 595 IPR044666 -
Pste3g03092 599 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 480 497 IPR020892 GO:0003755|GO:0006457
Pste3g03092 599 SUPERFAMILY Cyclophilin-like 446 596 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03092 Pste-Chr3 23741776 23748696 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03092 437 596 U-box Gene Family AT5G67530 45.625 7.31e-42 157