Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03079 CCCCCTTCATTTATCATCTGTTTCTTCGCTTTGTATAGCCAATGGATGAGAACTCAATAATAAATGGTACCCATGAGTTGGTTTTAGATGTAAACAAGGATGTGATCTCTAGAACAAGTGAAGCCTCACGCTCTTGTGTCAACGTTTCTTTCTTGCAGAAGTTGGTAGCAGAGGTGGTAGGCACGTATTTCTTGATATTTGCAGGGTGTGCTTCAGTGGTGGTGAACAAGAACAACGACAACGTTGTAACACTTCCTGGGATATCGATTGTTTGGGGACTGGTTGTCATGGTGCTGGTTTACTCTGTTGGTCACATTTCTGGTGCCCATTTCAATCCTGCTGTCACCATTGCTTTTGCCTCCACCAAAAGGTTTCCTGTCAAGCAGGTGCCAGTTTATGTAGTAGCTCAGGTTGTTGGATCCACACTGGCAAGTGGGACTCTCAGACTATTATTTAGTGGCAAGGATACCCAGTTTTCAGGAACGCTCCCAGCTGGGTCTGACGCGCAAGCTTTCGTGATTGAATTCTTAATCACATTTTTTCTTATGTTTGTCGTATCCGGGGTTGCCACTGATAACAGAGCGATCGGTGAGTTGGCCGGGATTGCCGTTGGGTCCACTGTGCTGTTGAATGTGTTGTTTGCAGGGCCAATCACAGGAGCATCAATGAACCCAGCAAGAAGCTTAGGGCCAGCCTTTGTACACAATGAATACAGAGGAATATGGATATATTTAGTGTCTCCAACTATAGGGGCTGTGAGCGGGGCATGGGTCTACAACTGTATCCGTTACACGGACAAGCCACTCCGTGAGATCACCAAGAGTGCCTCTTTCCTTAAAGCAGCTGGCCGTAGTGGTAGCTCTAGGTGATTTAACCACATTATTATATGTATTCAATTCTCATTGGAGAGGAGTAGTAACTTAACTTTGGACTAATACTTGTCTCCTAAATTTGTTATTTTCAACATCATATATCAGGAATCACTAGGATATCATTGCAAACACATATATACAAACAAATATTAGACTTTTCAC 1034 0.4371 MDENSIINGTHELVLDVNKDVISRTSEASRSCVNVSFLQKLVAEVVGTYFLIFAGCASVVVNKNNDNVVTLPGISIVWGLVVMVLVYSVGHISGAHFNPAVTIAFASTKRFPVKQVPVYVVAQVVGSTLASGTLRLLFSGKDTQFSGTLPAGSDAQAFVIEFLITFFLMFVVSGVATDNRAIGELAGIAVGSTVLLNVLFAGPITGASMNPARSLGPAFVHNEYRGIWIYLVSPTIGAVSGAWVYNCIRYTDKPLREITKSASFLKAAGRSGSSR 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03079 275 Gene3D Glycerol uptake facilitator protein. 7 260 IPR023271 -
Pste3g03079 275 NCBIfam MIP family channel protein 43 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste3g03079 275 PRINTS Major intrinsic protein family signature 115 134 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste3g03079 275 PRINTS Major intrinsic protein family signature 160 178 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste3g03079 275 PRINTS Major intrinsic protein family signature 78 102 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste3g03079 275 PRINTS Major intrinsic protein family signature 228 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste3g03079 275 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste3g03079 275 PRINTS Major intrinsic protein family signature 191 213 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste3g03079 275 SUPERFAMILY Aquaporin-like 33 259 IPR023271 -
Pste3g03079 275 PANTHER AQUAPORIN NIP2-1 29 265 IPR034294 -
Pste3g03079 275 Pfam Major intrinsic protein 34 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste3g03079 275 ProSitePatterns MIP family signature. 96 104 IPR022357 -
Pste3g03079 275 CDD MIP 39 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03079 Pste-Chr3 23605814 23607911 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03079 35 274 Major Intrinsic Protein MIP AT5G37810 62.397 1.01e-106 309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03079 3 23605814 23607911 Pste3g03079 3 23605814 23607911 ECH
Pste3g03079 3 23605814 23607911 Pste2g02226 2 22345373 22355124 PCT