Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03072 CCCCCTTTCTTTTCAAATCAACTATGCGTTGACCCTCCGTTCAACCTCGAAAACAAAACTGGAAAATTGAAGAAAGAATCCCTGAGAAACACAAATAGCCTTTCTTTTTCTTCTCTGCGATTTCTCAGCTTTCTTTCCTCCCCTTTTCAGGTGAAAAGCTCCAATAACGTAACTGCCATTTTTTTTAATTTAATTATTGTTACTTTACGTGCAAGCTTCTCCAATTTTCCCCGTCCACTGAAAGAAGAATACTACGTTAACATTTTTGGGGAAATTCAACCCATGATTCTTCTGCAAGATTTTGTCAGATTTGGGAAGAAAGAAGTTTCTTTTTTGTGGGATCTCCCTGAGGGGATTGAGGTGATGGATGAAGCACAGGGTAGTTCAAGTTCACTGCCCCCTTTCCTGGCAAAGACTTATGAGATGGTGGATGATCCTTCCACGGATTCGGTTGTTTCGTGGAGTGTGAGTAGCAAAAGTTTCATTGTATGGAATCCCCCAGAATTTGCAAGGGATTTGCTGCCCAGATTCTTTAAGCACAACAACTTCTCAAGTTTCATCAGGCAGCTGAACACATATGGATTTAGAAAAATTGACCCAGAACAATGGGAATTTTCCAATGATGATTTTGTAAGAGGGAAACCTCATCTTATGAAGAATATCCATAGACGGAAGCCAGTTCATAGCCATTCTTTGCAGAATCTCCAAGCACAGGGCCCACTAGAGGAGTCAGAAAGGCAGAGTTTTACTGATGAAATAGAGAAACTTAAACATGATAAAGAGAGACTTCTTATGGAATTACAGAAATATCATCATGAGTGGCAAACGTATGAGATACAAATACATTGCTCAAATGATCGGCTGGAAAAATTGGAAAAGAATCAACAGAGGATGGTTTCTTCTGTTTCTCATGTATTGCAGAAACCTGTGATTTCTGTAAGTATCTTGCCTCTGACAGAAACCATGGATAGAAAACGAAGGTTGCCCAGAAGCGGCCACTTTTATGATGAAGCTAGTATTGAAGATGATTTTGAAACTTCCCAAATGTTACCAAGAGAAAATGCAGAGAATACCACTGTCCTGACATTAAACGTGGAGCGATTGGATCAGCTTGAATCATCCATAGCATTCTGGGAGGCTATTGCAAATGATATTGGTGACACCTCCATTCAAATTCAGTCAAACATGGATTTTGATGAATCTACAAGTTGTGCTGATAGTCCATCTATATCTTGTGTGCAAGTTGAAGTTGAAGTTCGGCCAAAGTCGTCTGGAATTGACATGAACTCTGAGCCAACTACAGCTTCTGTTCCTGAGCCTGTTGCATCAAAAGAACAACCTGTGGGAATCACTGTTGCAGCAACTGGTGTTAATGATGTATTCTGGGAACAGTTCTTGACAGAGGATCCGGGTGCATCAGAAACACAGGAAGTGCAGTCAGAAAGAAAGGATTATGATGGCCCAAAGAATGAAGGAAAACCTAGTGACGTTAGCAAATTTTGGTGGAACAAACGGAATGCTAATAAACTTCCAGAACAGATTGGGCATGTTAGTCAAGCGGAGAAAACTTAGTGGCAATTGATTATTCTTCTTGCTTGTACTGCCCTACAATCACATGTAATAAAATAGGTATGGATGGTTTTCTAATTTTGCCTACGATAGATACATATTCCATATTATGGATTTGCATCCTTCATTGATTTCTAGTTAAGTATGTTTCTCTTTGGTCTCTTCTAGTTCGATATTATGCCTGTACAGAACTGTTGTTTGGTTCAAGCTTTTAAATTAAGGACCATATCATGCAGCTTCTGTACTGCATACTTCACAACAGGGCAACCATGACTACAATCATAATCTTTGTACGGTTATCTCGGTCTATGTTTGTTCTCTTTTCCTTTGATCCCTTCCTGATGTTACTTGTAAGTTGTACGATATGACAGAAGCTGCCTACTGATAACCTCTGTGACCATCCTTTGGTTGTTGGCTTACCTCCTTGTTTGTTGATGGAAATCATCCTGCAGCTG 2024 0.3982 PPFFSNQLCVDPPFNLENKTGKLKKESLRNTNSLSFSSLRFLSFLSSPFQVKSSNNVTAIFFNLIIVTLRASFSNFPRPLKEEYYVNIFGEIQPMILLQDFVRFGKKEVSFLWDLPEGIEVMDEAQGSSSSLPPFLAKTYEMVDDPSTDSVVSWSVSSKSFIVWNPPEFARDLLPRFFKHNNFSSFIRQLNTYGFRKIDPEQWEFSNDDFVRGKPHLMKNIHRRKPVHSHSLQNLQAQGPLEESERQSFTDEIEKLKHDKERLLMELQKYHHEWQTYEIQIHCSNDRLEKLEKNQQRMVSSVSHVLQKPVISVSILPLTETMDRKRRLPRSGHFYDEASIEDDFETSQMLPRENAENTTVLTLNVERLDQLESSIAFWEAIANDIGDTSIQIQSNMDFDESTSCADSPSISCVQVEVEVRPKSSGIDMNSEPTTASVPEPVASKEQPVGITVAATGVNDVFWEQFLTEDPGASETQEVQSERKDYDGPKNEGKPSDVSKFWWNKRNANKLPEQIGHVSQAEKT 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03072 523 SMART hsfneu3 131 224 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste3g03072 523 SUPERFAMILY "Winged helix" DNA-binding domain 130 224 IPR036390 -
Pste3g03072 523 PRINTS Heat shock factor (HSF) domain signature 186 198 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste3g03072 523 PRINTS Heat shock factor (HSF) domain signature 173 185 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste3g03072 523 PRINTS Heat shock factor (HSF) domain signature 135 158 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste3g03072 523 Coils Coil 246 273 - -
Pste3g03072 523 MobiDBLite consensus disorder prediction 475 493 - -
Pste3g03072 523 MobiDBLite consensus disorder prediction 467 500 - -
Pste3g03072 523 MobiDBLite consensus disorder prediction 422 442 - -
Pste3g03072 523 FunFam Heat shock transcription factor 1 128 225 - -
Pste3g03072 523 ProSitePatterns HSF-type DNA-binding domain signature. 174 198 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste3g03072 523 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 126 342 IPR027725 -
Pste3g03072 523 Pfam HSF-type DNA-binding 135 224 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste3g03072 523 Gene3D - 127 225 IPR036388 -
Pste3g03072 523 MobiDBLite consensus disorder prediction 426 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03072 Pste-Chr3 23502565 23504973 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03072 128 523 HSF AT4G18880 52.826 3.79e-123 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pste3g03072 HSF_DNA-bind 6.1e-31 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03072 3 23502565 23504973 Pste3g03072 3 23502565 23504973 ECH
Pste2g02217 2 22213692 22215612 Pste3g03072 3 23502565 23504973 ECH
Pste3g03072 3 23502565 23504973 Pste2g02217 2 22213692 22215612 PCT