Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03052 GTGGATGGAAATTTCACACACACAAAAAAAAAAACAAAAAAGAAAAGAAAAGCGAAACGCGTATTTTTGGAACGACAAATTACAAAACCAAAACATTGGGTTTTCTTTTATTTTTTTTGTTTTCCCCTTCTGACCTCGAATTTCCGATCAGTTCCGATTCTCTCAGCTAGGGTTTCGAAATCTACCGCACCTTTCTCCAACAGACGATCGCGATGCACCTCTAGGGTTTCTCCCTCTCCCTCTTCCCGCTAATCTCAGTTCGCAATTTTGATTATATTACATGCCATCAGAGGAAGATGTATAGCAATTTCAAGGAGCAGGCGATAGAGTACGTGAAGCAGGCCGTGCAGGAAGACAATGCCGGAAACTACGCGAAAGCGTTCCCTCTCTACATGAACGCGTTGGAGTACTTCAAGACGCATCTCAAGTATGAGAAGAACCCTAAGATCAAGGAAGCTATTACGCAGAAATTCACCGAGTACCTCCGCCGGGCTGAGGAGATTCGGGCCGTCCTCGACGACGGTGGGCCCGGTCCGGCCTCCAACGGGGACGCCGCTGTCGCCGCCAGACCCAAGACAAAGCCCAAGGACGGCGAAGGCGGAGGCGACGGGGAGGACCCCGAGCAGGCCAAGCTCCGGGCTGGGCTCAACTCGGCCATCGTAAGGGAGAAGCCCAACGTGAAGTGGAACGACGTCGCTGGGTTGGAGAGCGCCAAACAGGCCTTGCAGGAAGCTGTGATTTTGCCTGTCAAGTTCCCTCAGTTCTTTACTGGGAAAAGACGACCCTGGAGAGCCTTCTTGTTGTATGGACCTCCTGGAACGGGAAAATCATATTTAGCCAAGGCAGTTGCCACTGAAGCTGAATCCACATTTTTCAGTGTTTCTTCCTCAGACCTTGTTTCCAAGTGGATGGGTGAAAGTGAAAAGCTGGTTTCAAACCTTTTCCAAATGGCCCGAGAGAGTGCCCCTTCTATAATATTTATTGATGAAATAGATTCACTATGTGGTCAACGTGGAGAAGGCAATGAGAGTGAAGCTTCAAGACGAATTAAAACAGAGCTTCTGGTGCAGATGCAGGGTGTAGGACACAATGATCAGAAAGTTCTTGTTCTTGCAGCAACAAATACACCCTATGCCTTAGACCAGGTGCATCTAGGAGATACTCCCCATAACTTGACAGAAAGTGATTTTGAATACTTGGCTAGCAGGACAGAGGGGTTTTCTGGTTCAGATATATCTGTCTGTGTAAAGGATGTCTTATTTGAACCCGTTCGTAAAACCCAAGATGCGATGTTTTTCTTTAAGAATTCTGAGGGTATGTGGATCCCATGTGGACCAAAGCAACAGGGCGCAATCCTTCCGCCCCCTATTACTAGGACAGATTTTGACAAGGTACTTGCTAGACAAAGGCCTACAGTAAGCAAAGGCGATCTTGATGTTCATGAGAGATTCACGAAGGAATTTGGAGAGGAA 1472 0.4762 MYSNFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDGGPGPASNGDAAVAARPKTKPKDGEGGGDGEDPEQAKLRAGLNSAIVREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEAESTFFSVSSSDLVSKWMGESEKLVSNLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQVHLGDTPHNLTESDFEYLASRTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKNSEGMWIPCGPKQQGAILPPPITRTDFDKVLARQRPTVSKGDLDVHERFTKEFGEE 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03052 392 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 121 376 IPR027417 -
Pste3g03052 392 Pfam ATPase family associated with various cellular activities (AAA) 168 283 IPR003959 GO:0005524|GO:0016887
Pste3g03052 392 SMART AAA_5 163 304 IPR003593 GO:0016887
Pste3g03052 392 SUPERFAMILY MIT domain 2 81 IPR036181 -
Pste3g03052 392 Gene3D - 283 369 - -
Pste3g03052 392 Gene3D - 6 75 - -
Pste3g03052 392 SMART smart 2 79 IPR007330 -
Pste3g03052 392 Pfam Vps4 C terminal oligomerisation domain 351 390 IPR015415 -
Pste3g03052 392 MobiDBLite consensus disorder prediction 73 110 - -
Pste3g03052 392 PANTHER AAA DOMAIN-CONTAINING 284 391 - -
Pste3g03052 392 FunFam Vacuolar protein sorting-associated protein 4 126 286 - -
Pste3g03052 392 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Pste3g03052 392 MobiDBLite consensus disorder prediction 91 110 - -
Pste3g03052 392 CDD MIT_VPS4 4 77 IPR045253 -
Pste3g03052 392 FunFam vacuolar protein sorting-associated protein 4A 279 373 - -
Pste3g03052 392 Gene3D - 126 282 IPR027417 -
Pste3g03052 392 FunFam Suppressor of K+ transport growth defect 1 6 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03052 Pste-Chr3 23296443 23307105 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03052 162 330 Calmodulin-binding Proteins AT3G56690 33.673 1.20e-26 110
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03052 3 23296443 23307105 Pste3g03052 3 23296443 23307105 ECH
Pste3g03052 3 23296443 23307105 Pste1g02865 1 12245984 12250294 PCT