Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03046 ATGAGTTTTAGGGAGTGCAATGTAAAAAACAAGAATCTATGCCTTCAAACCCCAACTTTCATTGAGTGGCTCAAACCATCATCTTCCTCTCTAAATAGTTCAACATCATCATCTCCTCCTTCCTTGATTCAGCATGACCAACTTGACCAAGAAACAATCCAGTTTTTTCCCTTCAAGGAAGACCAAGGAGTGCAAAAGGATGGTTTAGAAGTAAAAGAAGAGAAGGTGGAACAGGTGACTGTGTCTTTGCACATTGGATTGCCTAATTATACAAGAGATCCTGATGAGCATGATGCTGATGATGAGAAGAAGGTTTTCCTTGTTAAGGAAGAACAGCCCTTAAAGAAAAACTTTCAGGGCTGTTCTTTTAACCAGGAAAGAAGATTTTGGATACCAACTCCTGCACAGATCCTTGTTGGACCGATGCAGTTTGCTTGCTCCATATGCAGCAAGACCTTCAACAGATATAATAATATGCAGATGCATATGTGGGGACACGGATCCGAATTTAGGAAAGGACCAGACTCACTTAAAGGAACACAACCAGCTGCAATGCTAAGGCTACCATGCTACTGTTGTGCCCAGGGTTGCAAGAACAACATCAATCATCCAAGAGCAAAACCCTTAAAGGACTTCAGAACCCTCCAAACTCACTACAAAAGAAAGCATGGTGCTAAACCATTTATGTGCCGAAAATGTTCAAAATCCTTTGCAGTTAAAGGGGATTGGAGGACTCATGAGAAAAACTGTGGAAAGTTGTGGTATTGCACTTGTGGTTCAGATTTTAAACACAAAAGGTCCCTTAAAGATCATATTAGATCCTTCGGAAAAGGACATTCCCCTCATCCTTCTCTTGAAGGCTTCGTGGAGGATGAGAAGGAATGCGTTACCGGGTCTGATGAAGATGAAGTTGCTCATACATGA 924 0.4156 MSFRECNVKNKNLCLQTPTFIEWLKPSSSSLNSSTSSSPPSLIQHDQLDQETIQFFPFKEDQGVQKDGLEVKEEKVEQVTVSLHIGLPNYTRDPDEHDADDEKKVFLVKEEQPLKKNFQGCSFNQERRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGAKPFMCRKCSKSFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHSPHPSLEGFVEDEKECVTGSDEDEVAHT 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03046 307 FunFam Zinc finger protein WIP2 197 279 - -
Pste3g03046 307 Gene3D Classic Zinc Finger 184 276 - -
Pste3g03046 307 Gene3D Classic Zinc Finger 143 166 - -
Pste3g03046 307 PANTHER ZINC FINGER PROTEIN WIP2 27 294 IPR043584 GO:0003700|GO:0010468
Pste3g03046 307 SUPERFAMILY beta-beta-alpha zinc fingers 214 248 IPR036236 -
Pste3g03046 307 ProSitePatterns Zinc finger C2H2 type domain signature. 146 166 IPR013087 -
Pste3g03046 307 ProSiteProfiles Zinc finger C2H2 type domain profile. 144 171 IPR013087 -
Pste3g03046 307 Pfam Zinc finger, C2H2 type 144 163 IPR013087 -
Pste3g03046 307 SUPERFAMILY beta-beta-alpha zinc fingers 112 167 IPR036236 -
Pste3g03046 307 SMART c2h2final6 144 166 IPR013087 -
Pste3g03046 307 SMART c2h2final6 191 223 IPR013087 -
Pste3g03046 307 SMART c2h2final6 228 248 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03046 Pste-Chr3 23249152 23252456 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03046 7 297 C2H2 Transcription Factor Family AT1G08290 57.015 2.59e-122 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste3g03046 zf-C2H2_6 0.00013 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03046 3 23249152 23252456 Pste3g03046 3 23249152 23252456 ECH
Pste3g03046 3 23249152 23252456 Pste1g02876 1 12327365 12331128 PCT