Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03014 AGAAAGAAAGAGTGTAAGGTAGCGTGGAGCACAGAAGCAAGCAAAGAACAAGAACAAGAACAAGAACAAGAACAAGAACAAGAACAAGCACAAGAACAAGAACAACAGCAAGCACAAGAGCAACAGCAAGCCTTCCTTCCTTCGTTTATCTTTAAACAACAGGCGGGGCGGCCTGTCTTCATGGAAGCCCAGATGTCGGTTGCTGCTTCCTCCATGTTTCCTGGCTTCCGCTTCTGTCCCACCGATGAGGAGTTGATTTCTTATTACCTTAGGAAGAAGTTGGACGGCCATGAAGACAGTGTTCAAGTCATTTCTGAGGTTGAGCTTTGTAAATATGAACCTTGGGATTTACCAGGCAAATCGTTCATTCAATCAGATAATGAATGGTTCTTCTTCTCTCCTCGTGGAAGAAAGTATCCAAATGGTTCACAAAGTAAAAGAGCGACTGATTCTGGATATTGGAAGGCCACTGGTAAAGAGCGAAATGTAAAGTCAGGTTGTAACGTTATTGGAACAAAGCGGACTTTGGTGTTCCACCTAGGGCGTGCACCTAAAGGAGAGAGGACTGAGTGGATTATGCACGAGTACTGTATCAATGACAAGTCTCAGGATTCTTTGGTGATTTGTCGGCTGAAGAGGAACACAGAGTTCCGTTTGAGTGATGTTTCGAATAGAGCTTCTTCGAGTCAAAGGCACCCGGTGAATTCACATGAAAGTGGTTGTGCTATTTCCGAACAAAGGGATGTTTGTGAGCAAGACAAAGAGGTAGGATGCAGCTCCAAGAGAAGCAGCAGCAGTTATGGTTCTCCTTCCACGGACCAAATTGATTCTGTTTCCGAATCCAATCAGCGACCAGCTACTTTTACAGAATCTTCAGATCAACCAAAGGAGGTGTATGAAGAGGATTGTTATGCTGAGATACTAAAGGATGATATAATCAAATTAGATGAATCATCAATGTCTGGTGCACAAAGGCATCCTGCACAAGGCTCAGCACAACGGAGAATAAGACTAAGGGTTGGGAAGTCAAAGCATTCCCCAGCAGTAGAGGTAGTTCGTTTTCCAAGCACAATGCACTCATCCAAGAGTACCTTCTTCGCCAGAATAACCAACACTTTGGTAGTATTTGCTTTCTTTGTTTTCACTTTAATAATTCTATGTATTGGGTGGACACAAACACGTCAAGTGTTATGGGAAATTTTCTGGTGTAAATTAGCGTAAGCATTTGTTAAATTACTTTTCCTTCCTAATACTAATACAATATTGCATTAGCCTTTGACA 1281 0.4247 RKKECKVAWSTEASKEQEQEQEQEQEQEQAQEQEQQQAQEQQQAFLPSFIFKQQAGRPVFMEAQMSVAASSMFPGFRFCPTDEELISYYLRKKLDGHEDSVQVISEVELCKYEPWDLPGKSFIQSDNEWFFFSPRGRKYPNGSQSKRATDSGYWKATGKERNVKSGCNVIGTKRTLVFHLGRAPKGERTEWIMHEYCINDKSQDSLVICRLKRNTEFRLSDVSNRASSSQRHPVNSHESGCAISEQRDVCEQDKEVGCSSKRSSSSYGSPSTDQIDSVSESNQRPATFTESSDQPKEVYEEDCYAEILKDDIIKLDESSMSGAQRHPAQGSAQRRIRLRVGKSKHSPAVEVVRFPSTMHSSKSTFFARITNTLVVFAFFVFTLIILCIGWTQTRQVLWEIFWCKLA 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03014 406 Pfam No apical meristem (NAM) protein 74 197 IPR003441 GO:0003677|GO:0006355
Pste3g03014 406 MobiDBLite consensus disorder prediction 259 293 - -
Pste3g03014 406 MobiDBLite consensus disorder prediction 1 20 - -
Pste3g03014 406 Gene3D NAC domain 81 219 IPR036093 GO:0003677|GO:0006355
Pste3g03014 406 Coils Coil 10 44 - -
Pste3g03014 406 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 71 276 - -
Pste3g03014 406 MobiDBLite consensus disorder prediction 1 39 - -
Pste3g03014 406 SUPERFAMILY NAC domain 61 213 IPR036093 GO:0003677|GO:0006355
Pste3g03014 406 ProSiteProfiles NAC domain profile. 72 214 IPR003441 GO:0003677|GO:0006355
Pste3g03014 406 MobiDBLite consensus disorder prediction 254 297 - -
Pste3g03014 406 MobiDBLite consensus disorder prediction 221 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03014 Pste-Chr3 22983631 22986769 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03014 62 324 NAC Transcription Factor Family AT2G27300 52.852 1.05e-92 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pste3g03014 NAM 6.4e-35 No_clan