Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03012 CAGTTACTTTCCTTACCTAACCCTGCTACTCCTTTTCTTACATATAAGTAATCACAATTTTGTCCATTCTTCCAGCCACACCCCCAACCAGAGAGGCAAAGCCCTGAGCTTTTACGCCCTGTGCTTCGATTCAAACATACCCGGCTCCATTTTTTATTATAAATTCTAATGTTTGAGGCAAAAAGCAAGGGCAGTGGTGATATTTTGGATCATGTTGATGAAAGGGTGTATGAGGATTTAAACCAATTGGTTGAAGGAAATGCAATTGATGCAGAAGCTGGACATAGCTTGGGTGACAGAGTTAGTATAAGTGTGGAAGATGGGGCTTCACAAGAGATGTGCAATGATCTTGGATTGAATAAGGAGCTAAAGGAGGGGCCTGAAGAACTTAATGATCAGGATATTGGTGACCCACAAGAAATTAATGATACATTGCATGGGGTTGATCAAGGAACTAGTTACAGTTCAAGAAATTTGGTTAGTGGGGAAGTGCCTGAAACTTGTGTTGTAATAGATCCTTCTGCTCAGATTGAGTGTGTCAATGGAAATAATAAGAAATTGGAAGCAAAACCTAATGAACTAGGGTTGAACAAGGTGTCCATGAAAGTGACTAAAGGGGTGTCTGAGACAGATAAAAATTCATGTGTGATTGATATAAACCGTGGCAGCTGTGATGGGTTTAGTGAGAGTTTGGAAGGTGAAATGATTTGTAGGATTTGCCATCTGGCGTCTGGGCAACCATTAGAAGCAGCGGCTGTTGGCACTGCGAGTAATGCTACTACAAATACAGATTTGATTCAGCTTGGTTGTGCATGTAAAGATGAGCTGGGCATTGCACACAGTCATTGTGCTGAGGCATGGTTTAAGCTTAAAGGAAACAGGTTGTGTGAAATTTGCGGTGAGACTGCAAAAAATGTCTCGGAAGTTACAGATAATGGATTTATGGAAGAGTGGAATGATACCAGGTTCATGGACAATGATAATACCCGATCCAGAAGATTTGGTGGATGCTTGCGCGGACAACCATTTTGTAACTTCTTAATGGCATGTCTGGTAATAGCTTTTGTTCTACCATGGTTCTTTCGTGTAAATATGTTCTAGCTAGTAGAGGGCTAAACACTACTCTTCCCCTCAAATCTTCATCACTGCCTATATGATGAGTGCATCATTGAAGTTCGTCGCATATTCTTTCTCCGAAGGGGTGGCAATTACCATGACCAACTTCACATTTCTCAGGGTATATAGTACCCTGATGCCTTGAAATTTGGTTGTGAACAAACTTACCAACTTGGCAAGTTATGGCCCAAATTGTTTCCTTCTTGCATTCTTTCGATTGGAGTGCGAATGGTGTTCTGAGAAAAATATAATCAGCGGGATCGGTTTTACATTTGGCATAGATGTTTTATATTAGAAATATTACACTATTCGCTGTAAAACATGCAAACTTAAAAGAGCCTCTCCTTGATTTTCCTTCTCTCTTTTAAGTTAATTCACTTTTTTCTTTCTTTAATCTCTG 1516 0.4011 MFEAKSKGSGDILDHVDERVYEDLNQLVEGNAIDAEAGHSLGDRVSISVEDGASQEMCNDLGLNKELKEGPEELNDQDIGDPQEINDTLHGVDQGTSYSSRNLVSGEVPETCVVIDPSAQIECVNGNNKKLEAKPNELGLNKVSMKVTKGVSETDKNSCVIDINRGSCDGFSESLEGEMICRICHLASGQPLEAAAVGTASNATTNTDLIQLGCACKDELGIAHSHCAEAWFKLKGNRLCEICGETAKNVSEVTDNGFMEEWNDTRFMDNDNTRSRRFGGCLRGQPFCNFLMACLVIAFVLPWFFRVNMF 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03012 310 MobiDBLite consensus disorder prediction 72 101 - -
Pste3g03012 310 ProSiteProfiles Zinc finger RING-CH-type profile. 173 250 IPR011016 GO:0008270
Pste3g03012 310 SMART ringv_2 180 244 IPR011016 GO:0008270
Pste3g03012 310 Pfam RING-variant domain 201 243 IPR011016 GO:0008270
Pste3g03012 310 SUPERFAMILY RING/U-box 178 246 - -
Pste3g03012 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 167 255 IPR013083 -
Pste3g03012 310 PANTHER ZINC FINGER, RING-CH-TYPE 82 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03012 Pste-Chr3 22964583 22968442 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03012 161 309 C3H Transcription Factor Family AT5G05830 36.943 5.46e-26 100
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03012 3 22964583 22968442 Pste3g03012 3 22964583 22968442 ECH
Pste3g03012 3 22964583 22968442 Pste2g02192 2 21931827 21935478 PCT