Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03007 TTCTTGATTCTTCTATGGGTATTTTCTCTGGCGGAATCTTCATGCAAGAACAGTGAAGAGCAGGAGTTGGTGTTAAAGGCTTTCAAATCAGTCTCTGGCTTCAACGCTTCCTCCTGGTTCCAAACCAATTGTTCTGAAACTCACATCACCCGAATAGTACTTCCATCCCAAAACCTCAGTGGTACAATTTCATGGGGTTACCTGAGGAACATGTCCGACTTGCAGGTTCTTGATCTTTCTGGAAATTCCTTACAGGGACAGGTGCCAAGCTGGTTTTGGTCTAGTTCTTCCTTAACGAAAATAGACCTCTCCAGAAACAGGTTCGGAGGGAGAATCATTATCAACTCCCTGAAACCCACATCAGAAAACACCTCGTTATCGTTTCCATCCATTCAAAATCTCAACCTCTCACACAACAGGTTAACTAATTCAATCCAACTTTCTGGTTTTCAAAACCTTAAAATCCTCGACCTTTCCAACAACAACCTCACAACACTGCCTTCCGGGTTCGAAAACCTGACCAACCTACAACACCTTGACCTCTCAAGCTGTAATGTCCAAAGCAAAATAAAACCCATTTCCTCTCTTCACTCACTTAACTACTTGGACTTATCAAACAACACGTTGACGGGAAATTTTCCTTCTGATTTCCCTCCACTCAACAGCCTCAAATTCCTAAACATCTCCTACAACAACTTGACGGCATCAATTAGCCTAAACAAGTTGAATAGGTTCAACGCATCATCTTTCATCCACGCTGGCAAGAACTTCACCTACGACAACACAACATCCAAAAGGACCAACGACACAAGAGAGGACATCCACAAGACCGAACACAAGCGAAAATCCAAAACGCTGAAGGCGGCAGCGTGGAGTGCAGCATCAGCAGTTGTCCTAATTCTGTTGTCTGTTTGGGCAGTCCGCATTGTGATGAAGAAGAGGAAGGAACGCGCTAAGAGGAAGAAATGGGCGATTTCGATGGCGGTACCACATGGGATGAGCGTGACGACGAGCAAGGTGGAGAAATTAGGACCGTTCTCGTTCGAGACTGAATCGGGGTCAACGTGGGTGGCTGACCTGAAGGAAGCGTCTTCGGCGCCGGTGGTCATGTTCGAAAAGCCGTTGATGAATCTAAGCTTCAAGGACCTCATTATTGCCACGTCACACTTCGGGAAGGACTCGTTGCTCGCCGAGGGAAGGTGTGGGCCCGTGTACAGAGCCGTGCTGCCCGGGGACCTCCACGTGGCAATCAAGGTTCTCGAACACGCCAGAGTCCTTGATCCTGATGACTCCGTCGCCACCTTCGTTGACCTCTCCAGGCTAAAGCACCCCAACTTGTTGCCCCTCTCCGGTTACTGCATAGCAGGTAAGGAGAAGCTGGTACTATACGAGTACATGGCAAACGGCGACCTAGGAAGGTGGCTACACGAGCTTCCGACTGGGGACAACAACGTGGAGGACTGGACAGGCGACACGTGGGAAATTCAAAATGGCGTCGTGGACGATGGATCCCCAGAGAAGATGGGGTGGCGGACACGACACCGTATCGCTGTGGGCATAGCGCGTGGCCTCGCGTACCTTCACCATGCGCGTTCCAAGCCCGTGGTGCATGGCCACCTCGTAACCTCCAACATTCTCCTCGCCGACGATTTCGAGCCCCGGATCTCCGATTTCGGATTGCAACCCGAGCCGGGTCCCAGCGGCGGCACGGAGGGCGACGTGTACTGCTTCGGGGCGGCGCTGATAGAGCTCCTGACGGGGAAGGAGAGCACCGCGGAGGCGGTTGCGGCGGCAAGGAGGGCGGTGAGGGAAGGGCACGGGGTTAGGGTATTGGACGAGAGGCTGAGAGTGGGTGGCGACTCGGTGGTGAGTGAGGTGGTGGAGTCTCTCCGAGTGGCGTTTTTGTGTACGGCGGAGTGCCCTTCTAAGAGGCCCACAATGCAGCAAGTATTGGGTTTGCTCAAAGACATTCGTCCTCACTCTCATCAGCAACTCGTCTCGGTTCTTGTCATTATGCTGTATAGACTCATTTTTGGGGCAAAAGAAAAAGTGGAAAAAGACAAAAAGATGGGCATGATGAAGGGCGAGGGGCGACAC 2097 0.515 FLILLWVFSLAESSCKNSEEQELVLKAFKSVSGFNASSWFQTNCSETHITRIVLPSQNLSGTISWGYLRNMSDLQVLDLSGNSLQGQVPSWFWSSSSLTKIDLSRNRFGGRIIINSLKPTSENTSLSFPSIQNLNLSHNRLTNSIQLSGFQNLKILDLSNNNLTTLPSGFENLTNLQHLDLSSCNVQSKIKPISSLHSLNYLDLSNNTLTGNFPSDFPPLNSLKFLNISYNNLTASISLNKLNRFNASSFIHAGKNFTYDNTTSKRTNDTREDIHKTEHKRKSKTLKAAAWSAASAVVLILLSVWAVRIVMKKRKERAKRKKWAISMAVPHGMSVTTSKVEKLGPFSFETESGSTWVADLKEASSAPVVMFEKPLMNLSFKDLIIATSHFGKDSLLAEGRCGPVYRAVLPGDLHVAIKVLEHARVLDPDDSVATFVDLSRLKHPNLLPLSGYCIAGKEKLVLYEYMANGDLGRWLHELPTGDNNVEDWTGDTWEIQNGVVDDGSPEKMGWRTRHRIAVGIARGLAYLHHARSKPVVHGHLVTSNILLADDFEPRISDFGLQPEPGPSGGTEGDVYCFGAALIELLTGKESTAEAVAAARRAVREGHGVRVLDERLRVGGDSVVSEVVESLRVAFLCTAECPSKRPTMQQVLGLLKDIRPHSHQQLVSVLVIMLYRLIFGAKEKVEKDKKMGMMKGEGRH 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03007 699 FunFam Putative LRR receptor-like serine/threonine-protein kinase 351 465 - -
Pste3g03007 699 Gene3D Transferase(Phosphotransferase) domain 1 565 671 - -
Pste3g03007 699 ProSiteProfiles Leucine-rich repeat profile. 152 174 IPR001611 GO:0005515
Pste3g03007 699 SUPERFAMILY Protein kinase-like (PK-like) 380 672 IPR011009 -
Pste3g03007 699 PRINTS Leucine-rich repeat signature 196 209 - -
Pste3g03007 699 PRINTS Leucine-rich repeat signature 153 166 - -
Pste3g03007 699 Gene3D Ribonuclease Inhibitor 12 127 IPR032675 -
Pste3g03007 699 FunFam Calmodulin-binding receptor kinase CaMRLK 129 239 - -
Pste3g03007 699 Gene3D Transferase(Phosphotransferase) domain 1 466 564 - -
Pste3g03007 699 ProSiteProfiles Protein kinase domain profile. 390 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste3g03007 699 Gene3D Ribonuclease Inhibitor 129 291 IPR032675 -
Pste3g03007 699 SUPERFAMILY L domain-like 35 237 - -
Pste3g03007 699 Pfam Protein tyrosine and serine/threonine kinase 394 561 IPR001245 GO:0004672|GO:0006468
Pste3g03007 699 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 47 658 - -
Pste3g03007 699 Pfam Leucine rich repeat 129 185 IPR001611 GO:0005515
Pste3g03007 699 Pfam Leucine rich repeat 48 108 IPR001611 GO:0005515
Pste3g03007 699 Gene3D Phosphorylase Kinase; domain 1 350 465 - -
Pste3g03007 699 SMART LRR_typ_2 150 172 IPR003591 -
Pste3g03007 699 SMART LRR_typ_2 173 197 IPR003591 -
Pste3g03007 699 SMART LRR_typ_2 71 94 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03007 Pste-Chr3 22864478 22867825 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03007 49 657 Receptor kinase-like Gene Family AT5G07280 30.675 2.10e-72 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Pste3g03007 PK_Tyr_Ser-Thr 2.3e-20 CL0016