Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g02984 TGGAGAAGAAAGAGTTGCAGAGAATACTAGTCACTCATGACAGGAGCAAGCAAGCTAGCTATAAACTTGAAAATCTTACACAAGGGAAAGCAAAAGTTAGAGGCTTTTGTTTGCATCCCCTGCCCAGCGATGATGGACACTTTGTCCATATAGATAGCACCTCTCTACCTTCCTTCTCTTCCTCAACTTCATACCTCAGCTCCTTCCATCCTTTTATTAATTGAGCAAATGGTACGGACACTCCACACCCAACTCGTTAATTTCTGCAATTGATGTGAATCCTCTCTCACAGGATCTGTTTCCAATTCCATTTTATTTAATTTAATTTCTGATAATTTCATCACCCATCTAGCTATTATTTTTCCATAAACAATCATATTCCGGATACAAGTTCCTTTTCACCTCAGCGCCAGCGATGTTAATTAGTTGTTCAGGTTGATTTGCGAATTTTAAGGTACTTATAACTTACTAGGATTCACTAACACTGCAGCCGAGGCTGTCTGTCTTAATTTGTATTTTTCAGGATCTGTGACAAACAAGCAAGGAATTTAATTAAACCCCCAACATTAATGGAAGAAGCGTGTGTATTAATCCAACATAACTGAGCTATATACAGCATAATGGGCTAATCATCAAGATCGATATTGAAGTGAATAGAATAGAATATATAGATCCTAGAAAAGGATGATGAATTGAAATGAAAGGCTAATGATAGAAAGTTGTTGTGTTTCCGTACAGTGTTGCTGAGAAAAAGAGATACAATCATCATAGAACAAGAACGCAACATGGCGACGTACTTTCATGGAAGCACTTCGGAAATTCAACCTTCTGCAGATGGCTTGCAAACGCTTTACCTTATGAACCCAACTTACGTACCCTACCCTGACGCGCCGCACCACCCAACGCTCCTCGTCAATCCCAACGCGCTCAACCTCGCGAGTATGGCTCACGCGCCGCCCAACCAACAGCAGCAGCATGTCATTCACGGCGTGACTAACATCCTCGGATCCGGCAAATACGACGACCATTCTCGGCCTTCGTTGTTTGGCGAAAACATCGCCGCCTTCCACTGCTTCTCCGGTGGAGGTGGCGCCACGGCTGCTACAGCTTCTCCTCGTGTTCACTATAATCTGTGGGGTCCGGTGGTTGATCAGCCCGGAACGCCTTCTGGATGCTCCGGCGGCGGCGGTTTCCGGCGGCCTAGTCAGCAGGGTTTGTCTCTCAGCCTTTCCTCGCAGCAGACAAATTTTAGGTCGGTTTCCGGCGAGATTGATATTTCTGGACAAGGCCATGTCGCCGGAATTGTGAACTCGCCGACATCGCCGTCTACCGGAGTCTCCGGCGTTATTCTGGGGTCGAAGTATTTGAAAGCTGCGCAGGAACTTCTTGATGAAGTTGTTAACGTGGGAAAAGGAATCTACAAAGAGGAAAAATTTACAGAGAAGGTGAAAGCGAATAGGGAATCTAACAATTCTGATGCCGATGCCGGTGGTGGTGATGGTTCAAGTGGAGGAGGAGAAAACAGTGCTGGGAAACAAGTTGTTGAACTCAGCACTGCTCAGAGACAAGAACTTCAGATGAAGAAGTCCAAGCTTGTTACCATGCTCGACGAGGTAGAACAAAGGTACAGGCAATATCATCACGAAATGCAAATTGTGGTATCATCGTTTGAGCAGGCTGCGGGTTATGGGGCAGCAAAATCTTACACTTCCCTTGCCCTAAAGACAATCTCAAAGCAATTTCGATGCCTTAAAGATGCAATCTCTGCACAAATAAAAGCAACAAGTAAGACATTGGGTGAAGATGATTGCTTAGGGATTAAAGTAGAAGGGTCTAGGCTAAGGTATGTTGACCACCATCTACGGCAACAAAGGGCACTTCAGCAGCTAGGAATGATTCAACCCAATGCATGGAGGCCACAAAGAGGCTTGCCTGAACGAGCTGTTTCCATTCTTCGTGCTTGGCTTTTTGAGCATTTCCTGCACCCCTATCCAAAGGACTCTGATAAAGTTATGCTTGCTAAACAAACTGGACTTGCTCGGAGCCAGGTGTCAAACTGGTTCATTAATGCCCGAGTTCGGCTGTGGAAGCCAATGGTTGAAGAAATGTACTTGGAAGAAATGAAGGAGCATGAACAAGCTAATGGTTCAGAAAACACCATATCAAAAGAATCGAGCAAGGAGTTTGTTTCTACAGGAAATATTAATGTTGCACCGGAATCAGGTGCCATTAAACTCGATCACCTCCAATCTAAACAAGAAAGCTTCAACAACCAAAATACTTCTCCAACCGAGATGTCAACAAACTCTTCAATGTCTCGCATGGGAGGATCCCTTCAATCCCACTCTGGTTTCCATCTTGCAGGAACTGACATGCAAAGGAGTCCTAACAAACCAAGAAGTTCAGAAATGCAAAACTCTCCAAGTAGTATTCTTTCAGTGGACATGGAAATGAAACATAATGATGCAAATAATAGGGAAGCTAATGCAAAGTTTGACATTGAAAGGCTTCACAAAGATGGCTACCCTTTGATGAATAACAATGCAAACCATGGTGGGGGGTTTGGAGCGTTCACCACGGAAGACATTGGAAGTAGATTTAATGTCACTACTGAGCAACTGGCTTCAAGGTTCCATGGAAACGGTGTTTCTCTCACATTAGGACTTCCTCACAATGAGAACCTTTCTATCTCAGGAACTCAACATGGATTTCTCTCGCAGAATATTCATTTGGGAAGGAGACTTGAGATGGGAACGAATGGAAATGAGTTTTGTGCTATCAACACTCCACCTTCTTCTCACTCAGGCAACACTTATGGGAGCATTGACATCCAAAACCGAAAGAGGTTTGTTGCTCAGTTATTGCCAGATTTTGTGGCCTAAGAACTGATGCCTAGCTAGCTCGGATAGTGGATACTTTATGAGAAATATCTCACTTTTGAGTGTTTAATTTCTCTAGACACACATGCTTATTAACTTCGCAGAAGACACTTAGCTAGCTGCGGCCCAATAAATGAAATGGAGAGGCATGCATGTTCTTTTCACCTACATATATATAGTCACTAATTATGAAATGTATCGTCATTCAGGTATACTAAAATTCCTGGCGTGACAGGGGATGCCTGCTCCTTGTAAAGATTGGATATTGGTATAGGACTATACTTGCAGAGATTTAATTAAGTTAGCGTAATTATAGGATTCATAATGTTGGGGAGGGGTATGTAATATTTTATATGTAGCCAGGTACGTATACGTAAAGG 3259 0.4342 MATYFHGSTSEIQPSADGLQTLYLMNPTYVPYPDAPHHPTLLVNPNALNLASMAHAPPNQQQQHVIHGVTNILGSGKYDDHSRPSLFGENIAAFHCFSGGGGATAATASPRVHYNLWGPVVDQPGTPSGCSGGGGFRRPSQQGLSLSLSSQQTNFRSVSGEIDISGQGHVAGIVNSPTSPSTGVSGVILGSKYLKAAQELLDEVVNVGKGIYKEEKFTEKVKANRESNNSDADAGGGDGSSGGGENSAGKQVVELSTAQRQELQMKKSKLVTMLDEVEQRYRQYHHEMQIVVSSFEQAAGYGAAKSYTSLALKTISKQFRCLKDAISAQIKATSKTLGEDDCLGIKVEGSRLRYVDHHLRQQRALQQLGMIQPNAWRPQRGLPERAVSILRAWLFEHFLHPYPKDSDKVMLAKQTGLARSQVSNWFINARVRLWKPMVEEMYLEEMKEHEQANGSENTISKESSKEFVSTGNINVAPESGAIKLDHLQSKQESFNNQNTSPTEMSTNSSMSRMGGSLQSHSGFHLAGTDMQRSPNKPRSSEMQNSPSSILSVDMEMKHNDANNREANAKFDIERLHKDGYPLMNNNANHGGGFGAFTTEDIGSRFNVTTEQLASRFHGNGVSLTLGLPHNENLSISGTQHGFLSQNIHLGRRLEMGTNGNEFCAINTPPSSHSGNTYGSIDIQNRKRFVAQLLPDFVA 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g02984 698 Pfam Associated with HOX 187 327 IPR006563 -
Pste3g02984 698 ProSiteProfiles 'Homeobox' domain profile. 373 436 IPR001356 GO:0003677
Pste3g02984 698 Pfam Homeobox KN domain 393 432 IPR008422 GO:0003677|GO:0006355
Pste3g02984 698 SMART HOX_1 376 440 IPR001356 GO:0003677
Pste3g02984 698 Coils Coil 260 280 - -
Pste3g02984 698 CDD homeodomain 376 437 IPR001356 GO:0003677
Pste3g02984 698 MobiDBLite consensus disorder prediction 128 147 - -
Pste3g02984 698 SUPERFAMILY Homeodomain-like 377 443 IPR009057 -
Pste3g02984 698 FunFam BEL1-like homeodomain protein 9 379 441 - -
Pste3g02984 698 Gene3D - 379 458 - -
Pste3g02984 698 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 71 460 - -
Pste3g02984 698 SMART prehox3 182 328 IPR006563 -
Pste3g02984 698 MobiDBLite consensus disorder prediction 492 547 - -
Pste3g02984 698 MobiDBLite consensus disorder prediction 448 468 - -
Pste3g02984 698 MobiDBLite consensus disorder prediction 222 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g02984 Pste-Chr3 22589379 22593825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g02984 1 698 Homeobox Transcription Factor Family AT2G35940 45.204 1.72e-141 428
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pste3g02984 POX 1.2e-50 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g02984 3 22589379 22593825 Pste3g02984 3 22589379 22593825 ECH
Pste3g02984 3 22589379 22593825 Pste1g02991 1 13187345 13192769 PCT