Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g02964 ATGGACAAGGAGGACAGATTCTGTGATAAACTCAAGATGAGGAATAAGCCCAAGTTTGTTGGGGTGAGACAAAGAGCTTCTGGGAAATGGGCTGCAGAGATCAAAGACACATCAAAGAAGATTAGGATGTGGCTTGGTACTTATCAAACTGCTGAGGAAGCTGCTCGAGCTTATGATGAAGCTGCATGCCTCCTTCGAGGTTCAAACACTCGCACCAACTTCTCTACTCATGGGTATGCTATTGCTACAAATTCTCCTATATCTCTCAAACTCAGAAACCTCCTTGATCGTAAAGCCAAGTCAAATCAAAGTCAAATTCAAAACCAATCATCTATGATAAGTTCCACTTTCCAAGGTACTGCTACTGCAAATGTTGATACCAGTACCATCAATAAGATAATGGTGGTGGAAGATAACTCTAGCTGTAGTAGTGAAGGTAAGTCTTTGTTTTTGGTTCAGAACCAAGTCTCTAATAACCTTTATGGACTAGATATGAATATGATCAACTGTTCAATGGGTATCATACCAAATACATCTCAGTTAGATTACTCTTGGGAATTGGCCCAACAAAGGATTAACGAATTGCCATTGCCAAGAGATGGTTTCAATGTAGAAAGGCAGTTGCCTGGCTCGGTATATGCCACGAATGAGTGCCATGTGGAGGATACGTATGAATATGATGTCAATAATTCTCTCTCACACTTTTTCTGCTTCACTTGA 720 0.4056 MDKEDRFCDKLKMRNKPKFVGVRQRASGKWAAEIKDTSKKIRMWLGTYQTAEEAARAYDEAACLLRGSNTRTNFSTHGYAIATNSPISLKLRNLLDRKAKSNQSQIQNQSSMISSTFQGTATANVDTSTINKIMVVEDNSSCSSEGKSLFLVQNQVSNNLYGLDMNMINCSMGIIPNTSQLDYSWELAQQRINELPLPRDGFNVERQLPGSVYATNECHVEDTYEYDVNNSLSHFFCFT 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g02964 239 SUPERFAMILY DNA-binding domain 18 75 IPR016177 GO:0003677
Pste3g02964 239 CDD AP2 17 74 IPR001471 GO:0003700|GO:0006355
Pste3g02964 239 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
Pste3g02964 239 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Pste3g02964 239 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Pste3g02964 239 Pfam AP2 domain 17 67 IPR001471 GO:0003700|GO:0006355
Pste3g02964 239 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Pste3g02964 239 FunFam ethylene-responsive transcription factor RAP2-11 17 76 - -
Pste3g02964 239 Gene3D AP2/ERF domain 18 77 IPR036955 GO:0003700|GO:0006355
Pste3g02964 239 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 16 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g02964 Pste-Chr3 22389767 22390486 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g02964 15 216 AP2-EREBP Transcription Factor Family AT5G19790 42.601 2.19e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pste3g02964 AP2 5.3e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g02964 3 22389767 22390486 Pste3g02964 3 22389767 22390486 ECH