Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g02956 ATGAGATTGAAGGTGGTGTATTCTGTTCATCATGATTTGCCAGTGAAGCGTCATTTTTTGATGATCAAGGTTAGTGTTCCATGCAGCAGTTTGCTCACCATAGTGACAGTTAGATGTGGACATTGTGCCAATTTGCTATCAGTTAACATGGGAGCATCACTTCAAACTTTTCCTTCTCAAGACACTCAGCGATTTTCTACCGTTGGTAAGTTACAGAGACAGCATCTAAGTGTTCAAGAAGCATGCAGCAAGGAACTAGGATCATCATCAAAGTGCAAATCAATTGCGAGCGTAGACCATGAGCAACATAGGATTCCTCCCATTCGTCCTCCTGAGAAGAGACAACGTGTTCCTTCTGCTTATAACCGGTTCATTAAGGAAGAGATACAAAGAATTAAGGCTAGTAATCCAGATATCAGCCACAGAGAAGCATTTAGCACAGCAGCCAAAAACTGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGCTGGATGGCAATAAACAAGCAAAGTTGGACCAGGAGGATGGTACTCAAAAGTCTAACGGATTTTACTGA 558 0.4211 MRLKVVYSVHHDLPVKRHFLMIKVSVPCSSLLTIVTVRCGHCANLLSVNMGASLQTFPSQDTQRFSTVGKLQRQHLSVQEACSKELGSSSKCKSIASVDHEQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAKLDQEDGTQKSNGFY 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g02956 185 CDD HMG-box_SF 116 152 - -
Pste3g02956 185 PANTHER PROTEIN YABBY 6-RELATED 21 172 IPR006780 GO:0007275
Pste3g02956 185 FunFam Axial regulator YABBY 107 177 - -
Pste3g02956 185 Gene3D High mobility group box domain 99 176 IPR036910 -
Pste3g02956 185 Pfam YABBY protein 22 162 IPR006780 GO:0007275
Pste3g02956 185 SUPERFAMILY HMG-box 107 155 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g02956 Pste-Chr3 22300762 22309863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g02956 21 185 C2C2-YABBY Transcription Factor Family AT1G08465 62.791 9.80e-67 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Pste3g02956 YABBY 4.4e-60 CL0114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g02956 3 22300762 22309863 Pste1g03026 1 13453040 13458937 PCT