Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g02950 ATGCCACGCGTCGGAATCACAAAGAGTGGAAGACCAAGACCGAGCGAGCTTAAGGGTGCTGGGATGGAAGAGAATAATAATACTATCGATAATAATAAGTCTGAGGCGCATTTGACTTCTGCCGCTGCTTTTGTGGAGGGTGGAATTCAGGACGCTTGTGATGATGCTTGCAGCATATGCCTTGAAGCCTTCTGTGATAGTGATCCTTCAACGGTGACAAGTTGCAAGCATGAGTTTCATCTTCAGTGCATTCTGGAATGGTGTCAAAGAAGCTCCCAGTGCCCAATGTGTTGGCAACCTATCAGTCTCAAAGATCCAACAAGCCAAGAATTACTTGAGGCAGTCGAAAGAGAGCGAAACTTTAGGTTCAACCCATCTAGAAATGCCACAATATTTCATCATCCAACACTGGGGGATTTTGAGTTACAACATTTACCAGTTGGAGCTAGTGATGCTGATCTTGAAGAGCGTATCATCCAACACTTAGCTGCTGCAGCAGCAATGGGAAGAGCACGCCACATTGCTAGAAGGGAAGGCCAGAGAAACAGATCATCAGCTCAAGGTCGCCCGCATTTTTTGGTTTTTTCAACTCATCCCAATTCACCTCCAATGGCTCCTGCTTCGTCCTCTCCATCTCAGAGGGGTGATGATGAACCAACTCCTGCAATTGCTGTTGCCAATCTGTCTCCAACTCCTGCAACTGGAGAAGAGTCATCACTGTTAACTTTAGTTCCTCCTGTTCAAGCAGAACAGGTTTCTGCTTCAGGATCTGGATCTACTGCTCCTCATACTGATCATCAGGGATCATCTAACAGCAATAGGAGATCTCCTAATCAGTCATCTCCAAGTAGTCAAGACAGAGCGGGACCATCAGAATTCCAGTCATTTTCAGAATCTCTGAAATCTAAACTGAATGCTGTGTCAACAAGATACAAGGAGTCAATTTCCAAGAGCACAAGAGGATGGAAAGAGAGATGGTTCTCTCGTAACAACACTATGTCTGATCTTGGGTCTGAAGTCAAGCGAGAAGTTAATGCTGGGATTGCAACTGTGTCGCGCATGATGGAACGCCTGGAGACCAGAGACAATAATAGAAGCAATAGCAATTCAGCTCCAAGTAATTTAGAGGATGCTTCAGTTCAAGGATCTAATGACCAGCCTTTAACAGCCACCGAAGGGGGTGGTCTTTTGAGAGACAATAACACAAAAGCTTCTTGTGCTGCCGGTTCTAGTTCGAATTAA 1242 0.4533 MPRVGITKSGRPRPSELKGAGMEENNNTIDNNKSEAHLTSAAAFVEGGIQDACDDACSICLEAFCDSDPSTVTSCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPTSQELLEAVERERNFRFNPSRNATIFHHPTLGDFELQHLPVGASDADLEERIIQHLAAAAAMGRARHIARREGQRNRSSAQGRPHFLVFSTHPNSPPMAPASSSPSQRGDDEPTPAIAVANLSPTPATGEESSLLTLVPPVQAEQVSASGSGSTAPHTDHQGSSNSNRRSPNQSSPSSQDRAGPSEFQSFSESLKSKLNAVSTRYKESISKSTRGWKERWFSRNNTMSDLGSEVKREVNAGIATVSRMMERLETRDNNRSNSNSAPSNLEDASVQGSNDQPLTATEGGGLLRDNNTKASCAAGSSSN 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g02950 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 26 132 IPR013083 -
Pste3g02950 413 SMART ring_2 57 97 IPR001841 -
Pste3g02950 413 MobiDBLite consensus disorder prediction 364 413 - -
Pste3g02950 413 MobiDBLite consensus disorder prediction 173 297 - -
Pste3g02950 413 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 13 106 - -
Pste3g02950 413 MobiDBLite consensus disorder prediction 358 413 - -
Pste3g02950 413 SUPERFAMILY RING/U-box 50 105 - -
Pste3g02950 413 ProSiteProfiles Zinc finger RING-type profile. 57 97 IPR001841 -
Pste3g02950 413 CDD RING-H2_RHF2A 44 106 - -
Pste3g02950 413 MobiDBLite consensus disorder prediction 1 31 - -
Pste3g02950 413 MobiDBLite consensus disorder prediction 244 297 - -
Pste3g02950 413 Pfam Ring finger domain 56 97 IPR001841 -
Pste3g02950 413 MobiDBLite consensus disorder prediction 201 216 - -
Pste3g02950 413 FunFam E3 ubiquitin-protein ligase RHF2A 28 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g02950 Pste-Chr3 22249988 22253316 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g02950 54 97 C3H Transcription Factor Family AT5G15790 50.000 6.57e-11 60.5