Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g02924 CGTTGGACCATATGGCGTCCATTGATTCATGACTTACTCTCCTCCATAAGGTGTATAGTACCGCAGAGGATCATAGTCCCTGACATTGAACTTCGTGCGTGGCGCTTCGCTACTGTGCCAAAAGGCACTCACTTCCCGCCGTTTCAATCACAAAACCGAACCGTAGTCACAATCCTCAATCCTCAATCCTCAATCCATTCTCTCTTCGCAGTGAGAGAAAGAGGGAAAACTCTGTTTTCACTCTCTAATCGTCTTCCTCTCTCGATTCTTCTAAACCGTGCTTCCATCCGAAACCCTAGCTTTCTTTTACGTGCGTCAATGGAGCTTCGCTCCCGTCGACTCCCTTCCAATTCCTCACTCACTGGGAATGAGCAGCAACCAAGGGATGATGCCGTTGCGGAAGAAGAAACTAAGGGCCAGTTCAGCAACAATAAAGATAAAGGAGTTGCTGTTATATCATCGGATTCAGATTTAGTTTCTGGTTCTGATTCAGATTCTGATTATGAAGATGAAGAATTTGGGGGGAGCTCCTTACCTGACTTGAATGAAGATCCATTTTCAAGCTTTAGTGTTTCTGCTGGAGAAGATTATGCTTCTGATTCTTCTGATGGTGGCAAGCCTTCTTCATCCAAAAGGGGGAAGGCTCAGGGGTCCAGAGGAAAAAAAAGTTCCAACACAGGGAATGGAGAACTGGCTGACGTGGTTAGAATGGTGGAGTTCCAAGATGATGGCGAATACTCAATGGTTCAGCAACAATCTGTTCCCTCTGCTTCGGAGGGAACTAAGAAGAGGAAGTATACAAGGAAAGGAAAAAATGGAGACTCTAAGCCAGTGTTGCTGTGGAATTTGTGGGAAGAGGAGCAAGAGAGATGGATTAATCAGAATAGATCAAAAGATGTTGAGTTAGATAATCAGAGTGAAGTAATGAATGAAACTGCTGAGGCGCCCTCTGATCTCACTATGCCTTTACTTAGGTACCAAAAGGAATGGTTAGCCTGGGCTTTGAAACAGGAAAATTCTGTGAGTAGAGGTGGAATACTTGCCGATGAAATGGGAATGGGGAAGACTATTCAAGCAATTGCTCTTGTCCTTGCGAAACGTGAATTCAGTTGTGAACCAGATCAATCCATACCATGTTCATCCACCCTGTTGCCTGCAATCAAAGGAACACTTGTTGTATGCCCTGTGGTTGCTGTTACTCAGTGGGGTAATGAGATTGATCACTTTACTTTAAAAGGAAGCACCAAGGTGCTTATTTATCACGGGGCTAATAGAGGGAGGAGTGGGAACCGCTTTGCTGATTATGATTTTGTGATAACTACTTACTCTGTTGTTGAGAGTGAGTACAGGAAGCATATGATGCCTCCTAAAGAGAGATGTCCATATTGTGGAAAATTATTTTTACCGAGTAAGTTGATGTATCATCAGAACTATTTTTGTGGACCTGATGCTCTTAGAACAGAAAAACAATCAAAGCAAGTTAAGAAAAAAAAAAGAGAAGTTACTAAAGGGAAGACCAAGGAACATGACAGTAACATGAAGTTGAGGAGTTCCAGCAAGAAAAAGGAAGACAAAATGTGGATGAATGTAGAAGATTCAGATGATGTACCTGTACGTAGTGGTAGTGATAGGTCATTTCTGCATGCTGTGAAATGGCAGCGGATCATATTGGATGAGGCACACTATATAAAATCTAGACATTGTAACACTGCCAAAGCAGTTCTTGCTTTAGAGTCTACCTACAAATGGGCCTTAAGTGGCACCCCTCTTCAGAACCGAGTTGGAGAGCTGTATTCTCTCATACGTTTCCTGCAAATAACTCCTTATTCCTATTATCTGTGCAAAGACTGTGACTGCATGATCCTTGATCACAGCTCTAAAGAATGTTCAGTCTGCACTCACAGTTCTGTGCGACATTTCTGTTGGTGGAATAAATACGTTGCCACACCAATTCAATCTTTTGGAAATGGTGATTCTGGGAAAAGAGCTATGTTATTGCTTAAACATAAAGTTTTGAAGAACATAGTATTAAGGCGCACGAAAGTAGGCAGGGCTGCTGATCTTGCACTTCCACCTAGAATTGTTTTGTTGAGAAAGGATTGCTTGGATATTAAAGAGCAAGACTATTATGAATCGTTATACAATGAAAGTCAGGCACAATTTAACACATATGTTGAAGCAAATACTCTGATGAATAATTATGCTCATATATTTGACCTCCTCACTCGATTGCGTCAGGCCGTTGATCATCCATACCTTGTGGTATATTCTCAAAGTGCAGCATCAAGAAGTGGAGTTATGACAATTAATGCTACTGTTGAACAAATCTGTGGCATTTGCCATGAGCCAGCAGAAGATCTAATTGTTACCTCTTGTGAGCATGCATTTTGCAAGGCATGCTTGATAGACTTCTCTGCTTCCTTGGGACGAGTATCCTGTCCCACGTGTTCAAAATTACTTACTGTTGATTTAACATCCAACAATGATGTTGGGGATCAGGCTACTAAAACAACAATTAAGGGTTTCAGATCGTCAAGCATTCTAAATAGAATTCGTCTTGAGAACTTTCAGACAAGCACTAAAATAGAGGCTTTGAGAGAAGAAATAAGATTCATGGTTGAAAGGGATGGTTCTGCCAAAGGGATTGTTTTTAGTCAATTCACATCATTCTTGGATCTTATAAATTACTCTTTACACAAGTCTGGAGTAACTTGTGTTCAGTTGAACGGAAGTATGTCATTGGCTGCGCGGGATGCTGCCATTCGAAGATTTACTGAAGATCCAGACTGCAAAGTTTTTCTCATGAGCTTGAAGGCTGGGGGGGTTGCACTCAATTTGACAGTAGCTTCTCATGTCTTCCTTATGGACCCTTGGTGGAACCCGGCTGTGGAGCGCCAGGCTCAGGACAGAATTCACCGAATAGGGCAATATAAACCTATAAGAGTTGTGAGGTTTGTCATAGAGAACACAATCGAAGAGAGAATTCTGAAACTGCAAGAGAAGAAGGAACTAGTGTTTGAAGGGACTATAGGTGGCTCTTCTGATGCTCTGGGGAAATTGACAGAGGCAGACCTGAGATTTCTATTTGTTACCTAACCAGGGCTGCTATCTGGCCCAGAAAATTTGTCAATGGTTCTGATAATTCATTTTGAATAACTATATATATTTTATTTATATATAGAAAAATGATTACAGGTGCTTGCGCCGCACAAGGATGCGATGTATTTTGTGGACGTTCCTTGATTTATGTTGTGGCGAACAGTAAATGCATTAATTAGCTGTATATACACTCTCATATAGGCTATTTGCCCACTGTAGTTGCTAGTGCCCAAGAAACAAAGTACTGAACTATTGAATAGTGGGATTTTGAAGCTTCAGATTTTCTGTTTCAATCGTGTAACGTCATTATTTTTTAGAGATTTTCA 3425 0.4131 RWTIWRPLIHDLLSSIRCIVPQRIIVPDIELRAWRFATVPKGTHFPPFQSQNRTVVTILNPQSSIHSLFAVRERGKTLFSLSNRLPLSILLNRASIRNPSFLLRASMELRSRRLPSNSSLTGNEQQPRDDAVAEEETKGQFSNNKDKGVAVISSDSDLVSGSDSDSDYEDEEFGGSSLPDLNEDPFSSFSVSAGEDYASDSSDGGKPSSSKRGKAQGSRGKKSSNTGNGELADVVRMVEFQDDGEYSMVQQQSVPSASEGTKKRKYTRKGKNGDSKPVLLWNLWEEEQERWINQNRSKDVELDNQSEVMNETAEAPSDLTMPLLRYQKEWLAWALKQENSVSRGGILADEMGMGKTIQAIALVLAKREFSCEPDQSIPCSSTLLPAIKGTLVVCPVVAVTQWGNEIDHFTLKGSTKVLIYHGANRGRSGNRFADYDFVITTYSVVESEYRKHMMPPKERCPYCGKLFLPSKLMYHQNYFCGPDALRTEKQSKQVKKKKREVTKGKTKEHDSNMKLRSSSKKKEDKMWMNVEDSDDVPVRSGSDRSFLHAVKWQRIILDEAHYIKSRHCNTAKAVLALESTYKWALSGTPLQNRVGELYSLIRFLQITPYSYYLCKDCDCMILDHSSKECSVCTHSSVRHFCWWNKYVATPIQSFGNGDSGKRAMLLLKHKVLKNIVLRRTKVGRAADLALPPRIVLLRKDCLDIKEQDYYESLYNESQAQFNTYVEANTLMNNYAHIFDLLTRLRQAVDHPYLVVYSQSAASRSGVMTINATVEQICGICHEPAEDLIVTSCEHAFCKACLIDFSASLGRVSCPTCSKLLTVDLTSNNDVGDQATKTTIKGFRSSSILNRIRLENFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVTCVQLNGSMSLAARDAAIRRFTEDPDCKVFLMSLKAGGVALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRVVRFVIENTIEERILKLQEKKELVFEGTIGGSSDALGKLTEADLRFLFVT 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g02924 1031 Pfam Helicase conserved C-terminal domain 861 975 IPR001650 -
Pste3g02924 1031 MobiDBLite consensus disorder prediction 246 260 - -
Pste3g02924 1031 Gene3D - 701 1029 IPR027417 -
Pste3g02924 1031 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 126 1029 - -
Pste3g02924 1031 SMART helicmild6 892 975 IPR001650 -
Pste3g02924 1031 Pfam Zinc finger, C3HC4 type (RING finger) 777 816 IPR018957 GO:0046872
Pste3g02924 1031 SUPERFAMILY RING/U-box 772 823 - -
Pste3g02924 1031 SMART ultradead3 319 612 IPR014001 -
Pste3g02924 1031 CDD SF2_C_SNF 859 986 - -
Pste3g02924 1031 CDD DEXDc_SHPRH-like 323 679 - -
Pste3g02924 1031 ProSiteProfiles Zinc finger RING-type profile. 777 817 IPR001841 -
Pste3g02924 1031 MobiDBLite consensus disorder prediction 503 524 - -
Pste3g02924 1031 MobiDBLite consensus disorder prediction 128 142 - -
Pste3g02924 1031 MobiDBLite consensus disorder prediction 181 230 - -
Pste3g02924 1031 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 857 1021 IPR001650 -
Pste3g02924 1031 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 551 1029 IPR027417 -
Pste3g02924 1031 MobiDBLite consensus disorder prediction 162 177 - -
Pste3g02924 1031 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 280 679 IPR027417 -
Pste3g02924 1031 MobiDBLite consensus disorder prediction 114 233 - -
Pste3g02924 1031 MobiDBLite consensus disorder prediction 246 272 - -
Pste3g02924 1031 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 770 841 IPR013083 -
Pste3g02924 1031 SMART ring_2 777 816 IPR001841 -
Pste3g02924 1031 MobiDBLite consensus disorder prediction 489 524 - -
Pste3g02924 1031 Gene3D - 325 459 IPR038718 -
Pste3g02924 1031 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 336 607 IPR014001 -
Pste3g02924 1031 Pfam SNF2-related domain 338 754 IPR000330 GO:0005524|GO:0140658
Pste3g02924 1031 Gene3D - 485 697 IPR038718 -
Pste3g02924 1031 MobiDBLite consensus disorder prediction 143 161 - -
Pste3g02924 1031 ProSitePatterns Zinc finger RING-type signature. 792 801 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g02924 Pste-Chr3 22036148 22043575 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g02924 253 1031 RAD5 or RAD16-like Gene Family AT1G05120 67.647 0.0 1078
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pste3g02924 SNF2_N 1.8e-47 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g02924 3 22036148 22043575 Pste3g02924 3 22036148 22043575 ECH