Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g02919 GAAAATGCAGCTCCAGATTCTTCTGCTAACAATGTGGGAGCTGGTAGCACTTTAGCTCCTACGCGACCTGTATATGTACCTCCCCATCTGAGGAACCGTCAGCCTTCGGCAGAATCTCCTGCTCCTGCATATGGTGGCCCTTCTTCAGGTACTGGATCTAGTTCTGGTGCTGGTAATTCTGGATCCCGTTGGGCTGCACCCAGAAATGATTATCGCTCTGGGCATGGTGGTAGTGGTGGTGGTGGTGGTGGTGGACGACAGGTGGATGGGGAAACAGAAGTGGTGGGTGGGATCGTGAGGGAAGTCAATCCCTTTGGTGATGAGGATAATGCGGAAGAGGCATTTAGTGAGCTGGAGAATACTGGAATAAATTTTGATGCATATGAAGACATTCCAGTGGAGACAAGTGGTGAAAATGTGCCCCCACCTGTTAACACGTTTGCAGAGATTGATTTGGGTGAAGCACTTAATCAGAATATAAGAAGGTGCAAATACGTGAAGCCAACACCTGTTCAGCGGCATGCCATACCAATATCCCTAGGAGGACGTGATTTGATGGCTTGTGCACAGACTGGTTCAGGGAAGACAGCTGCATTCTGTTTTCCAATTATCAGTGGAATTATGAGGGGGCAACCTGTGCAGAGGCCACCTCGTGGGGTGCGTACAGTGTATCCACTTGCGCTTGTTCTGTCTCCAACCAGGGAGTTGTCAATGCAAATACATGAAGAGGCTAGGAAGTTTTCCTACCAAACTGGGGTTAGGGTTGTTGTTGCGTATGGTGGAGCACCAATAAACCAGCAGCTGCGAGATCTTGAAAGAGGGGTTGACATTCTTGTTGCAACTCCTGGAAGACTGGTAGATTTGCTGGAGAGAGCTAGAGTTTCACTGCAGATGATTCGATATCTGGCCTTAGACGAGGCAGATCGGATGCTGGATATGGGTTTTGAGCCGCAGATAAGGAAGATTGTAGAACAAATGGATATGCCTCCACCAGGTGTCAGACAGACTATGTTGTTCAGTGCAACATTTCCAAAAGAGATTCAGAGATTGGCTTCTGATTTCCTTTCAAATTATATTTTCCTGGCTGTTGGAAGAGTGGGTTCAAGTACTGATTTAATTATACAAAGAGTTGAGTATGTTCAAGAATCTGACAAGAGAAGTCACCTAATGGACCTTCTTCATGCCCAGAGGGCAAATGGTGTACAAGGAAAGCAAGCTTTGACTTTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATTCTCTGGAACACTGGCTGTGTCTTAATGGTTTTCCTGCAACTACTATTCATGGTGACAGGTCCCAACAGGAAAGAGAATTAGCATTGAGGTCATTTAAAAGTGGCAACACCCCAATATTGGTTGCCACCGATGTTGCTGCACGTGGACTTGATATACCCCATGTTGCTCATGTGGTCAACTTTGACCTGCCAAATGATATTGATGATTATGTACACCGAATTGGAAGAACGGGGCGAGCTGGAAAGAAAGGCCTTGCAACTGCATTCTTTAATGATAACAATTCATCGCTAGCTAGGGCTTTAGCAGATCTGATGCAAGAAGCAAATCAAGAAGTACCTGCTTGGCTCTCACGGTATGCTGCTCGTTCTTTTGGAGGGAGGAACCGCAGATCAGGTGGTCGATTTGGTAGTCGTGACTTTCGAAGAGAGGGCTCTTTTAGCAGAGGTGGTTCAGATTACTACAATGCAGGAAACAGCAGTGGCGGTGGATATGGAGGCTCTGGTGGGTATACTGGAGGGTATGGTCCTGGGGTCACTAGTGCATGGGACTGACTTTCTTGTTTTCATAGCATTACATACCATCTTAGGTATAGGTGCGGATACACACCTACAGGATGATTTTTCTCCCCTCTTGTTTTTATGGTCTTCAATTTCCTTGTGTTTCAAGCCATAATCATTTTGTACTATCTTACAGTGCTAATCATTGTGGGGGATATGGGTTTGTGTATGTGGTCTAGTTGCCACATCAATAAAGGTTGTGTAATGTTGGTAGGGAATTGGTGATTACTAACATATTAGGAGTTTCTGGTGGACAACTTTTTGCCCCCTTCATTTTGGGTGGTAATTTTGGTGGAAGACTGGTTGTAGATTATGCAAGGGGAGAAATCGAGCTTTTTGTTATAGCCGATCGTGGTTATCTTACTTATCTCTCAAGCATGCTCTTTCCAGTTTTCAACCGAATTTGTGTTGGAGTTTAATATTCCCTACTTTGATGGGCAAAGGTTTTTGTAATATTATTATAGTGGTGTTTGAAATGAACGAAAAGTTCCTGCTTATGCTTTCAATTGTCAATATCGTTGTATGCTTGGGTGGTGGTAACACGTTCATTTGTTTGAATCCTTCTTGGGGGAAATTAACGCAGACCATGGGCTAAGTTGTCTTATCACGTTGTACAATAGAGTCTGCCACGTTATCAAAGAATGTCTA 2463 0.4466 ENAAPDSSANNVGAGSTLAPTRPVYVPPHLRNRQPSAESPAPAYGGPSSGTGSSSGAGNSGSRWAAPRNDYRSGHGGSGGGGGGGRQVDGETEVVGGIVREVNPFGDEDNAEEAFSELENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIISGIMRGQPVQRPPRGVRTVYPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGVRQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIIQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADSLEHWLCLNGFPATTIHGDRSQQERELALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNSSLARALADLMQEANQEVPAWLSRYAARSFGGRNRRSGGRFGSRDFRREGSFSRGGSDYYNAGNSSGGGYGGSGGYTGGYGPGVTSAWD 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g02919 602 MobiDBLite consensus disorder prediction 1 17 - -
Pste3g02919 602 MobiDBLite consensus disorder prediction 582 602 - -
Pste3g02919 602 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 115 539 - -
Pste3g02919 602 CDD DEADc_DDX3_DDX4 146 367 IPR044763 GO:0003724|GO:0005524
Pste3g02919 602 MobiDBLite consensus disorder prediction 46 62 - -
Pste3g02919 602 SMART helicmild6 419 500 IPR001650 -
Pste3g02919 602 MobiDBLite consensus disorder prediction 1 90 - -
Pste3g02919 602 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 145 173 IPR014014 GO:0003724
Pste3g02919 602 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 176 361 IPR014001 -
Pste3g02919 602 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 372 539 IPR001650 -
Pste3g02919 602 FunFam Probable ATP-dependent RNA helicase DDX4 107 363 - -
Pste3g02919 602 FunFam ATP-dependent RNA helicase RhlB 364 542 - -
Pste3g02919 602 Gene3D - 364 542 IPR027417 -
Pste3g02919 602 CDD SF2_C_DEAD 373 509 - -
Pste3g02919 602 SMART ultradead3 164 376 IPR014001 -
Pste3g02919 602 Pfam Helicase conserved C-terminal domain 385 500 IPR001650 -
Pste3g02919 602 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 226 517 IPR027417 -
Pste3g02919 602 Gene3D - 100 363 IPR027417 -
Pste3g02919 602 Pfam DEAD/DEAH box helicase 169 350 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g02919 Pste-Chr3 21979903 21987159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g02919 143 532 Eukaryotic Initiation Factors Gene Family AT3G19760 32.225 1.43e-62 210