Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g02900 GCTGCCACAATTTTCTCCATCTGTTTCCCTCTTTCTTCACTCCTTCAATTCCTTTGTCTTCTCCTCTTCTTTCTTTCCTCCCAATGTCTCCCTGTAGACTAAGCTTTTTGCCATCACAACACACATCAAAAGCTTTCCATGGTTACCATATTTAAGAACCTTTATTTCCATAACTTGTTCCGATACTTCTTCTCATCTATACATCCTTGAAAAGGGTCCCTTTTTTAGCAACAAGTTTAGCCCCAAAACAAATCTAAATACTCATCTTCTTCTAGCTATTCTCTCCAGCAACTACCACCCACTGTGACCTTGTCAGAATTAAGAAGAAACGCATCCTGTGAAGTGAAACTTTTTCAACACAGGAGAGAGAATTGAAGGAGAGGGATTGAAAAGAGTTTGAAATATGCCAGCTGGTATTATGATCCCAGCAAGAAACATGCCCTCCATGATTGGAAGAAACGGAACTGTTGGTGGCTTTGGATTATCTTCAGGGCTCTCTCTTGGTCAGATTGAAAACCATAAGGCTTCGGAATCTCAGAGATCTGTAGAAATGTTCCAGCCAAACCTGATGGAAGCTGGTCAACTCCACCTACTGGACATGCCTCAGAACACTTCAGAGAGCGATGTTCCAAGAATCCGTGAAGATGAATTTGACAGTGCCACCAAGTCAGGCAGTGAAAACCAAGAAGGTGCTTCCGGTGAAGACCAAGACCCTCGTCCCAACAAGAAGAAACGCTACCACCGCCACACTCAGCACCAGATCCAGGAAATGGAAGCTTTCTTCAAGGAGTGTCCGCACCCTGACGACAAGCAAAGGAAGGAGCTGAGTCGAGAGTTAGGGTTAGAGCCATTGCAGGTTAAGTTTTGGTTCCAGAACAAGCGAACTCAAATGAAGACCCAACATGAGCGCCATGAGAACACACAGCTTAGAACTGAAAACGAGAAGCTTCGAGCAGATAACATGAGGTTCAGGGAAGCTCTCAGCAATGCCTCGTGTCCTAACTGTGGTGGACCAACCGCTATAGGGGAAATGTCATTCGATGAACATCACCTGAGGCTCGAAAATGCGCGCCTAAGAGAAGAGATTGACAGGATTTCTGCGATTGCTGCAAAGTACGTGGGGAAACCTGTGGTTAGCTATCCACTTGTTTCTCCTTCATCTGTTCCTTCTCGTCCACTGGAGCTTGGGATTGGTGGTGGTTTTGGTGGCCAGGCTGGGGGCATTGGTGGGGATATGTATGGTGGAGCTGCAGGAGATCTTCTTAGGTCAATAAGTGGACCGACTGAAGCTGATAAGCCCATCATAATAGAGCTTGCTGTTGCAGCCATGGAGGAGCTCATTGGAATGGCTCAAATGGATGACCCTCTTTGGTTGACTAGTCTCGATGGCACCACCACTGTGCTCAACGAGGAGGAGTACATCAGGTCCTTTCCTCGAGGGATTGGTCCTAAACCCGCTGGTTTCAAGTGTGAAGCTTCTCGAGAAACTGCCGTTGTTATCATGAACCATGTTAGCCTTGTTGAGATCCTCATGGACGTGAACCAATGGTCCACAGTGTTCTCTGGCATCGTCTCAAGAGCAATGACACTGGAAGTGTTATCAACAGGGGTGGCGGGGAACTACAACGGTGCATTGCAAGTGATGACAGCAGAAGTACAAGTACCTTCACCGCTCGTGCCAACTCGAGAGAGCTATTTTGTAAGATATTGTAAGCAGCATGTTGACGGCACTTGGGCAGTTATATGGGTTGAGCATGTAGAAGTGGATGAGAGAGGTGTTCATAATCTATACAAGCAGCTTGTTAGCATTGGACATGCATTTGGTGCAAAACGCTGGATTGCAACCTTAGATCGACAATGTGAAAGGCTTGCAAGTACCATGGCAACAAACATTCCCACAGTAGATGTTGGAGTGATAACAAACCAAGATGGGAGGAAGAGTATGTTGAAACTGGCAGAGAGAATGGTTATCAGCTTTTGTGCTGGAGTGAGTGCATCTACTGCACACACATGGACAACACTTTCTGGAACTGGAGCTGATGATGTAAGGGTGATGACACGTAAGAGTGTAGATGACCCAGGAAGGCCTCCTGGCATCGTTCTCAGTGCAGCAACATCTTTTTGGCTTCCTGTGTCACCAAAAAGGGTTTTTGAATTCCTCCGCGATGAAAACTCCAGAAGTGAGTGGGATATTCTTTCCAACGGTGGAGTTGTCCAAGAAATGGCACACATTGCCAATGGACGAGACACTGGAAATTGTGTCTCTCTACTTCGGGTGAATAGTGCAAATTCAAGCCAAAGCAACATGTTGATATTACAAGAGAGTTGCGCGGACTCAACAGGGTCTTTTGTCATATATGCCCCTGTAGATATTGTGGCAATGAACGTGGTTCTGAATGGAGGGGACCCGGACTATGTGGCCCTTCTCCCTTCAGGATTTGCTATACTCCCAGATGGGACCACTGCACATGGAGGAGGCATTGGTGACACTGAACATGGTGGATCTCTCTTGACCGTGGCCTTCCAAATTTTGGTTGATTCAGTTCCTACTGCAAAGCTTTCTCTTGGATCTGTTGCTACTGTTAACAATCTCATTGCCTGCACTGTTGAGAGAATCAAGGCTGCTTTATCTGGTGAAGTTGCTTGACCTAATGGAGAGCTAGTTTAGAAGAAGGATAAAGGGGGTGACATTATTGCATTTAGGAGAAATGGGGAGGTGTTGGGAGCTTCGGCTTATACAAAAAAGGATGAGAAGTCAAGAGCGCACCTTGCATGATCCTTTCTCAGAATCAAGCAGTTATGAGAGGATCAAGGTTCGGGAATTGACTTCCCTGGAAATATCAAATAGTAAATGCTAGGAGCTTAAATCATCGAAACCTTACTTTCTCTTCACCTTCTTATTAGACAACATATATATTTCGTTAGTTTTAGCTTTTTCTCTTATTAGCTTCTAGCTTTGGCGTCCGTAACCTCTTATGTTCCTTCTATTGTTAATTATATGTGTTTTATAGTAGTTCCATTCAAGCACTGGTCAGCTTGCCCAGTTAGTGTTAGTGTAGTGCTTAAATGATCACTACACCTATTTCACCCTTTTAAGCTTTTCATTTAATATTTTTTCCTCCAATTTGACAACTCTC 3137 0.4501 MPAGIMIPARNMPSMIGRNGTVGGFGLSSGLSLGQIENHKASESQRSVEMFQPNLMEAGQLHLLDMPQNTSESDVPRIREDEFDSATKSGSENQEGASGEDQDPRPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRTENEKLRADNMRFREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVSYPLVSPSSVPSRPLELGIGGGFGGQAGGIGGDMYGGAAGDLLRSISGPTEADKPIIIELAVAAMEELIGMAQMDDPLWLTSLDGTTTVLNEEEYIRSFPRGIGPKPAGFKCEASRETAVVIMNHVSLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEVQVPSPLVPTRESYFVRYCKQHVDGTWAVIWVEHVEVDERGVHNLYKQLVSIGHAFGAKRWIATLDRQCERLASTMATNIPTVDVGVITNQDGRKSMLKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVSPKRVFEFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCADSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTTAHGGGIGDTEHGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKAALSGEVA 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g02900 747 SMART START_1 303 488 IPR002913 GO:0008289
Pste3g02900 747 Gene3D - 94 183 - -
Pste3g02900 747 ProSiteProfiles 'Homeobox' domain profile. 106 166 IPR001356 GO:0003677
Pste3g02900 747 ProSiteProfiles START domain profile. 294 446 IPR002913 GO:0008289
Pste3g02900 747 ProSitePatterns 'Homeobox' domain signature. 141 164 IPR017970 GO:0000981|GO:0006355
Pste3g02900 747 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 107 447 IPR042160 -
Pste3g02900 747 FunFam Homeobox-leucine zipper protein HDG1 95 182 - -
Pste3g02900 747 CDD START_ArGLABRA2_like 298 487 - -
Pste3g02900 747 MobiDBLite consensus disorder prediction 83 117 - -
Pste3g02900 747 Pfam Homeodomain 109 164 IPR001356 GO:0003677
Pste3g02900 747 Pfam START domain 304 446 IPR002913 GO:0008289
Pste3g02900 747 SUPERFAMILY Homeodomain-like 98 166 IPR009057 -
Pste3g02900 747 Coils Coil 172 192 - -
Pste3g02900 747 SUPERFAMILY Bet v1-like 294 490 - -
Pste3g02900 747 SUPERFAMILY Bet v1-like 508 739 - -
Pste3g02900 747 CDD homeodomain 109 167 IPR001356 GO:0003677
Pste3g02900 747 SMART HOX_1 107 170 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g02900 Pste-Chr3 21776276 21783075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g02900 50 747 Homeobox Transcription Factor Family AT1G05230 75.203 0.0 1099
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pste3g02900 START 5.6e-27 CL0209
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g02900 3 21776276 21783075 Pste3g02900 3 21776276 21783075 ECH
Pste3g02900 3 21776276 21783075 Pste1g03112 1 14020461 14027709 PCT