Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g02875 ATGATTGTGTTAATGTTACTAGTTACCTTGCTACTTACTAGTATCTCAAAACAAACATACAAGTTACTCTCCCTTTCCTTCCAATCTACACCTCCCTTACCCTCTCTCATTCACATTCATGGACTCTGGGTTTCTCGATCTTGGCTAATTTTTTGTACCTGCTGGGCCTGGACTCTGGAGGGGAACACTACTGTTTTCATTTGCCCAGGGAGGAGCATGGAACCTCTATGTGAGTTTTGTGGGGTGGTGAGAGCTGTGGTTTACTGCAAGTCAGATTCTGCTCGTCTCTGCTTGCATTGCGATGGCTGTGTACACTCTGCAAATTCTTTGTCACGCAGGCATTCGCGATCCCTCCTTTGCGATAAGTGCAATTCCCAGCCGGCAATGATCCGTTGCATGGATCATAAGTTATCTTTGTGTCAAAGTTGTGACTGGAACCCTAATGAATGTTCTGCATTGGGACATATGCGCATTGCATTGAATTGTTACACTGGTTGTCCCTCTTTGGCTGAGTTTTCTAGGATTTGGTCCTTTGTGTTTGATGCTAATTCCTCACTTGGTGCTTGGGAATCGCTTGGTACTTTGCCAAAAAGTGAGAGCTGCACTAGCCAATGCTTGGAGCCACCTGATCATAATGGTGGTTCCTTTGGTTTGGTGACTGACAAGTTGGATGAAATTGAATCTTGTGTCAGATATGAACCTTGGATGGCGCAATCTCACATCATTCACTCAAATCCAAATTATACGCCCTTCTGCAAAGATGAAGCATTTTTCTTTCCCCAAGACTCAAACCAGCCCAAGGAATGTCCTAATCTAGGAATTCATGATGGGAATGAACTCTGTGAAGGTCTCAATGTGGATAATGTTCAATTAAACTTTGAAAGTGCTGATGAAATATTTGGCTCTTCACAAGCTGCCTCAAGATACCACCTTGAAAATGTAGGAATGGACTGTCTATTGATGGATAAAAGCATATCAGTCACAGAATCTAGTTCACTTATTGAGAGTGCCATAGAGCCATCATCATCTATCCAACAAGATGGCGTCGCTTTTCAGTCATCCAGGGCTGGTGGGTCTGCTAGTGTTATGCAGGTTATCAATAGTAATACAAATTGTGCGCTTATGAACCCTACCTGCACTAGAAACATCAGTCTAGGATTTCCTCAGGGCCAAGTTCATTCAAGCATACCACTTCAATTGCCCAACATTGTTGGTGAAAATAGTTCTACTGAATATCAAGACTGTGGGTTATCGTCAGTGTTTCTGCCAGGTGAATCCCCCTGGGAATCAAATTTGGAGGGTACATGCCCACAAGCAAGGGATAAAGCTAAAATGAGATACAATGAGAAAAAGAAAACTCGAACGTTTGGTAAGCAAATAAGATATGCATCTCGCAAAGCAAGGGCTGATACAAGAAAACGTGTGAAAGGTAGATTTGTTAAAGCAGGTGAAGCATATGATTATGACCCTCTTGTGACAAGGGACATCTAAGCATATTAGCTACAATGACGATCTTTTCCATGGAAGATATGTTTCTTCTGACTGGTTAGTATTTAGAAGATAACAAAGATATGAAGGTGTTGCAATTGGGAATTGCAGAGGAAGGGATTGGGTGTATGCCAAGATATTGCATTTATTTATACATAGAAAGTGTAAGAGGTAGCAGGCATGGGACATAGAGGAGCTGAACGTTTGAACAGATTTCAAACAGCATCACAGTCATTTCAATTCAGACAAACACAGAGGGCCTGGATATTCTTCCTTGCTTTCAGAGGAGATGTGCATGGTGATGCATCCTGAATTTCAAAGGAGATATTGTGTGAGTTTCTTAGCCTATGTGTTTTATATGAACACCGTCTAGTATAAAGAATAAAAGGGAAATTGGTGTTTGGCAAGCAACTATAGCCAACCTCTCATTTTCTGCTTTCAGTTTGGTCCTTCCTCATAGGGATCCTTCACACGAACTTATTCTGTCATCTTAAGCCATTGTTCAAGGACAGCAGCACCACATTTTGGAACATCTTCATTTATTCCATTTTCATCAGATTAATGAGCACGTGTAACTGTGGATTGAGATACTATTGTTCTTGACTTGCTGGAAGCCAGTTTCACCTGCAGCAACTATATGCATATCTGGCATTGCCACAACTATTTCATTTTTTGTATTGCTCTATTTTTCTTTTGGGGTTGATACCTATCTCTTAAATAATTGTACAAACGCTGTGTACAAACTTTCCTGATTTGAAGGGACGTTTGTTCTCCTATTAAATAGGGGTATTAATGACTGTTTTCTTTCTTTTGCACAAATCCATTTCAGTAATTACCATC 2328 0.4089 MIVLMLLVTLLLTSISKQTYKLLSLSFQSTPPLPSLIHIHGLWVSRSWLIFCTCWAWTLEGNTTVFICPGRSMEPLCEFCGVVRAVVYCKSDSARLCLHCDGCVHSANSLSRRHSRSLLCDKCNSQPAMIRCMDHKLSLCQSCDWNPNECSALGHMRIALNCYTGCPSLAEFSRIWSFVFDANSSLGAWESLGTLPKSESCTSQCLEPPDHNGGSFGLVTDKLDEIESCVRYEPWMAQSHIIHSNPNYTPFCKDEAFFFPQDSNQPKECPNLGIHDGNELCEGLNVDNVQLNFESADEIFGSSQAASRYHLENVGMDCLLMDKSISVTESSSLIESAIEPSSSIQQDGVAFQSSRAGGSASVMQVINSNTNCALMNPTCTRNISLGFPQGQVHSSIPLQLPNIVGENSSTEYQDCGLSSVFLPGESPWESNLEGTCPQARDKAKMRYNEKKKTRTFGKQIRYASRKARADTRKRVKGRFVKAGEAYDYDPLVTRDI 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g02875 496 ProSiteProfiles CCT domain profile. 440 482 IPR010402 GO:0005515
Pste3g02875 496 SMART bboxneu5 72 119 IPR000315 GO:0008270
Pste3g02875 496 Pfam CCT motif 440 482 IPR010402 GO:0005515
Pste3g02875 496 CDD Bbox1_BBX-like 76 119 - -
Pste3g02875 496 ProSiteProfiles Zinc finger B-box type profile. 72 119 IPR000315 GO:0008270
Pste3g02875 496 ProSiteProfiles Zinc finger B-box type profile. 115 160 IPR000315 GO:0008270
Pste3g02875 496 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 73 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g02875 Pste-Chr3 21525248 21529433 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g02875 72 490 C2C2-CO-like Transcription Factor Family AT3G21880 43.560 5.82e-99 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pste3g02875 CCT 1.7e-16 CL0281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g02875 3 21525248 21529433 Pste3g02875 3 21525248 21529433 ECH