Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g02858 ATGCACCTGACGTCTTCACACAGCCACATGAAAGCTGAGCTAAAGGGAACGTCCATTTCCTTTCAAAACCCTAGTACACTCTTCAACCCTCTCTCGGGAGCACTCAAAGGGTGTCTGGGAAGCCTAGATGGAGCTTGCATCGAGAAGCTCTTGCTCCACTGTGCAAGTGCTTTGGAGAGCAACGACATCACCTTGGCTCAACAAGTCATGTGGGTGCTCAACAACGTTGCATCTCCTTCGGGTGACACTAACCAAAGGCTCACTTCCTGGTTTCTTAGGGCATTAATCTCTAGGGCTTCCAGAATTTGCCCCGCTGCCATGACTTTCAAAGGAAGCAACGCCGTTCAAAGGAGGCTGATGAGCGTGACCGAGCTAGCCGGGTATGTGGATCTAATTCCTTGGCATAGGTTTGGTTATGTTGCATCCAACAACGAAATTTACAAAGCAATAACTGGGTTCCCAAGGGTACATATTCTAGATTTTAGTATAACCCATTGTATGCAGTGGCCTACTTTTATAGATGCTTTAGCAATAAGGCCTCAAGGACCCCCTTCACTTAGAATCACGGTTCCCTCTTGTAGACCACATGTGCCCCCCTTGGTCAATATATCAATACATGAGGTTGGGTTACGTTTAGGGAATTTCGCTAAGTTCAGAGATGTCCCTTTCGAATTCAATGTTATAGGAAATACAGGACCGTTAACACCAGCGGAATTGAGTGATGAGTCAACTAGTTTTCATTTTGAAGCAATGTTGTCTCTCTTGAATCCTACTATGCTCAACCTTAGGGATGATGAAGCTTTGGTCATAAACTGCCAAAACTGGCTACGCTATCTATCTGATGATAGAAAGGGAATTAGCCGCCAAAGTCTTTCCCTTAGGGACGCTTTTCTGAATCTTATTAAAGGTCTTAACCCCCGGATTGTGGTCTTGGTTGATGAGGATTGTGATCTTAGTGCCTCTAGTCTCACATCAAGAATTACCACATGTTTCAACCATCTATGGATACCCTTTGACGCATTGGAGACCTTTTTGCCAAAAGATAGTTGTCAGAGGACAGAGTTTGAATGCGACGTAGGCCAGAAGATTGAGAACATCATAAGCTTTGAAGGGCACCAAAGAATAGAGAGGTTGGAAACTGGGGTGCAAATGTCCCAAAGAATGAAAAATGTGGGCTACTTCAGTGTTCCATTTTGTGATGAAACTGTTAGGGAAGTTAAAGGTTTGCTAGATGAGCATGCTAGTGGGTGGGGGATGAAAAGAGAAGAGGGTATGTTAGTTCTCACGTGGAAAGGAAACAGCTGTGTGTTTGCGACAGCTTGGGTCCCCTGTGAAATAAGGGATCATATCGTGGTCCTTAGAGGAGGCAGAGGAGTTTCATCTCTTTGTGAAAGGGTTGAAATTCATCTGCAAAAGACAACTAGAGAAAACGGCTGCATCATGAGAATTATTGTGGCTACTTTCTTTAACTTGTCTCTGCTCAGAGCTTTGGCTATAAGAGAAATGATCAACCAATTGCAGTTGGGAGTCCAGATGGGACCTCTTTGTGAATTCTGTTTTGTGTTTTAA 1569 0.4423 MHLTSSHSHMKAELKGTSISFQNPSTLFNPLSGALKGCLGSLDGACIEKLLLHCASALESNDITLAQQVMWVLNNVASPSGDTNQRLTSWFLRALISRASRICPAAMTFKGSNAVQRRLMSVTELAGYVDLIPWHRFGYVASNNEIYKAITGFPRVHILDFSITHCMQWPTFIDALAIRPQGPPSLRITVPSCRPHVPPLVNISIHEVGLRLGNFAKFRDVPFEFNVIGNTGPLTPAELSDESTSFHFEAMLSLLNPTMLNLRDDEALVINCQNWLRYLSDDRKGISRQSLSLRDAFLNLIKGLNPRIVVLVDEDCDLSASSLTSRITTCFNHLWIPFDALETFLPKDSCQRTEFECDVGQKIENIISFEGHQRIERLETGVQMSQRMKNVGYFSVPFCDETVREVKGLLDEHASGWGMKREEGMLVLTWKGNSCVFATAWVPCEIRDHIVVLRGGRGVSSLCERVEIHLQKTTRENGCIMRIIVATFFNLSLLRALAIREMINQLQLGVQMGPLCEFCFVF 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g02858 522 Pfam GRAS domain family 48 441 IPR005202 -
Pste3g02858 522 ProSiteProfiles GRAS family profile. 38 442 IPR005202 -
Pste3g02858 522 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 47 431 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g02858 Pste-Chr3 21335833 21338002 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g02858 17 443 GRAS Transcription Factor Family AT3G49950 44.598 2.08e-119 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pste3g02858 GRAS 4.4e-87 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g02858 3 21335833 21338002 Pste3g02858 3 21335833 21338002 ECH