Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g02849 TATCAATTATCATATACAAATCTTAAATCCTCGTGATAACCAAACACGTGAAGATGAAGATATGCCCGAAAATATGCAAGACGACAAGACCTTGAAGGTGGAAAGACACAATGATGACAAGACATGTAGTAATGGTGAGGTGCACGATGATGGCAAGATGAATGATGGCGAAGAACATGACCTATGCTTTGCAAGTGTATCCTCGAAAATGATGAGCGAAGCGGCTGAGTTCGTCTCTGTTTTCTTCGTCATCTTCCCCAGCCAGAGATGCGCCCCCCAACACACACCCACTAAAGCTTTCAACTTTTCTACACCCTCTCAGTGCAGCTTGAATTGCACACACATGTTAGCCAAAGCCCATAATAAAGGGGATGGATCTAAGTCCCTGGCGAAGATACTGGCGAAATGGAAAGAATATAATGCCCAGCTTGATTCCAGCAATGATGCGGATAAGCCGATTCGCAAAGTTCCTGCCAAGGGATCGAAGAAAGGATGCATGAAAGGCAAAGGGGGGCCTGAGAATTCGCGGTGTAACTACAGAGGTGTTAGGCAAAGGACCTGGGGAAAGTGGGTTGCTGAAATTAGAGAGCCAAACAGAGGGAACAGGCTCTGGCTAGGTACTTTTCCCACTGCCATTGGAGCTGCACTTGCATATGATGAAGCGGCCAGGGCAATGTATGGTTCCTGTGCCCGTCTCAACTTTCCCAATATTGCAGTTTCCAGTTTCTCTGAGGAATCATCCAAAGATTCTCCAGTTGCCAATCATTCTGGTTCCTCAATGGCAGTGTCTGCAAATGAGTCCATGATTTCACCAAGTAACTCTGGAGTAGGCACAGAAGAGGATGTTGATATGGAGCCCATTTCCTTATCCTTAACTGTAAAACATGAGAATGGGGAAGGTGAGTCAGGGATAAGTTCGTCCTCTCCTTCTTCATCATGATGTACATTGGCACATGGATAGATTTTTTAGTGCATGTACTTGTTAATGATTAGCTTAGGTTTAATCAATCTTGATATCTGAACCTGGAGATTAGTTGTTGTAAAACTAAAACGAACTTGGTTGCAAAGTGGTCATTTCTTCTGGTTTTGGCCTGAAGTGCACCGGATATCCAGTCTCTTTTTAACTCATCAGATGTGAATTATACTCAACTTTTTATCATGTTATGTGCTTCTTCCCTCCCATCACTACACCTCCAAACCCCTTTGATATTTTCTCTATTTTTCCCTGCATATTTTGGTGTAACATGTCTTGCTAAACTAATATTATACCACTGTTAGAATGTGGTTTACTTAATTTTGAGAACGTACATTTCTCATGTAAGTTTCTACTTTCATTACTCGTCTGCCATGTATACGGGATAATATCTTTTTGAAATTGG 1379 0.4235 MPENMQDDKTLKVERHNDDKTCSNGEVHDDGKMNDGEEHDLCFASVSSKMMSEAAEFVSVFFVIFPSQRCAPQHTPTKAFNFSTPSQCSLNCTHMLAKAHNKGDGSKSLAKILAKWKEYNAQLDSSNDADKPIRKVPAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGNRLWLGTFPTAIGAALAYDEAARAMYGSCARLNFPNIAVSSFSEESSKDSPVANHSGSSMAVSANESMISPSNSGVGTEEDVDMEPISLSLTVKHENGEGESGISSSSPSSS 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g02849 292 ProSiteProfiles AP2/ERF domain profile. 158 215 IPR001471 GO:0003700|GO:0006355
Pste3g02849 292 SMART rav1_2 158 221 IPR001471 GO:0003700|GO:0006355
Pste3g02849 292 SUPERFAMILY DNA-binding domain 158 215 IPR016177 GO:0003677
Pste3g02849 292 CDD AP2 157 216 IPR001471 GO:0003700|GO:0006355
Pste3g02849 292 PRINTS Ethylene responsive element binding protein signature 181 197 IPR001471 GO:0003700|GO:0006355
Pste3g02849 292 PRINTS Ethylene responsive element binding protein signature 159 170 IPR001471 GO:0003700|GO:0006355
Pste3g02849 292 FunFam Ethylene-responsive transcription factor 2 157 216 - -
Pste3g02849 292 MobiDBLite consensus disorder prediction 1 34 - -
Pste3g02849 292 Gene3D AP2/ERF domain 158 217 IPR036955 GO:0003700|GO:0006355
Pste3g02849 292 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 98 265 - -
Pste3g02849 292 MobiDBLite consensus disorder prediction 225 257 - -
Pste3g02849 292 MobiDBLite consensus disorder prediction 225 292 - -
Pste3g02849 292 MobiDBLite consensus disorder prediction 127 153 - -
Pste3g02849 292 Pfam AP2 domain 157 207 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g02849 Pste-Chr3 21212912 21220072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g02849 102 243 AP2-EREBP Transcription Factor Family AT2G40340 57.534 3.29e-50 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pste3g02849 AP2 6.3e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g02849 3 21212912 21220072 Pste1g03193 1 14492264 14493068 PCT