Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g02825 GTACCTGCAGATCAGATGGTGAGAACCCCTTGTTGTGACAAAAATGGACTCAAGAAAGGCCCCTGGACACAAGAGGAAGACAGGAAGTTGATCGCATATGTCACTAAGTATGGCCATTGGAATTGGCGCTTACTCCCTAAGTTTGCAGGTCTTGCAAGGTGTGGGAAGAGTTGCAGGCTGAGATGGCTCAACTATCTGCGGCCAGATGTCAAAAGAGGCAACTTTAGTAATGAAGAAGAAGAAACCATTGTCACACTTCACGAAAAGCTGGGCAATAGGTGGTCAGCAATTGCTGCTCAATTGCCAGGGAGGACAGATAACGAGATAAAGAATCACTGGCACACCTCCCTTAAGAAGCGCTTTGAACAAAAGACAGACGCTAAACGTGGAACTGGAAAAGAAGTCAACGCCTCCAAGTCAATGAAGAGAGTCTCAGAGAACTACAGTGACCCCGATACCTATCCTCTATCTCCACAACCATGTCCATCATCATATACCCAATTTTCCTGCATAACAGCAAATGCTGCATCCACCAGAAACCACCAAAATTCAGTTATAGATACTGATGATGCTCTTTCCTTTTTGGACGAATACATTGACCCTGTGTGTTCCAATTTCTGGACAGAGCCTTATTTAACCGACAACTACGTCCCTCCCGAGTGTGAATCCGAATACTTTAGTCATCTCTACGATGCGGTAGAACTATGGACCCAAAATGATTTGTGGCTGCAACAATGTGACCCATTCTACTAA 753 0.4502 VPADQMVRTPCCDKNGLKKGPWTQEEDRKLIAYVTKYGHWNWRLLPKFAGLARCGKSCRLRWLNYLRPDVKRGNFSNEEEETIVTLHEKLGNRWSAIAAQLPGRTDNEIKNHWHTSLKKRFEQKTDAKRGTGKEVNASKSMKRVSENYSDPDTYPLSPQPCPSSYTQFSCITANAASTRNHQNSVIDTDDALSFLDEYIDPVCSNFWTEPYLTDNYVPPECESEYFSHLYDAVELWTQNDLWLQQCDPFY 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g02825 250 SMART sant 71 119 IPR001005 -
Pste3g02825 250 SMART sant 18 68 IPR001005 -
Pste3g02825 250 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Pste3g02825 250 MobiDBLite consensus disorder prediction 123 140 - -
Pste3g02825 250 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 66 IPR017930 -
Pste3g02825 250 MobiDBLite consensus disorder prediction 123 153 - -
Pste3g02825 250 Gene3D - 73 147 - -
Pste3g02825 250 Gene3D - 18 71 - -
Pste3g02825 250 SUPERFAMILY Homeodomain-like 16 113 IPR009057 -
Pste3g02825 250 ProSiteProfiles Myb-like domain profile. 14 66 IPR001005 -
Pste3g02825 250 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 6 180 - -
Pste3g02825 250 CDD SANT 74 117 IPR001005 -
Pste3g02825 250 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 121 IPR017930 -
Pste3g02825 250 FunFam MYB-related transcription factor 18 71 - -
Pste3g02825 250 CDD SANT 21 66 IPR001005 -
Pste3g02825 250 Pfam Myb-like DNA-binding domain 72 115 IPR001005 -
Pste3g02825 250 Pfam Myb-like DNA-binding domain 19 66 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g02825 Pste-Chr3 20969142 20971243 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g02825 6 214 MYB Transcription Factor Family AT1G06180 49.761 1.78e-65 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste3g02825 Myb_DNA-binding 1.1e-13 CL0123