Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g02792 AGGAGAGTTGACGGCATCACATCTCTGGTGGAGTGTAAGAAAGAGAGAGAAATGGGAAGGGGAAGAGTGGAGTTGAAGAGAATTGAGAACAAGATCAACAGGCAAGTTACCTTCGCCAAACGAAGGAACGGGCTTTTGAAGAAAGCTTACGAGCTTTCCGTTCTTTGCGATGCCGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTTTGCAGCAGTTCAAGCATGCTCAAAACGCTAGAGAGGTACCAGAAATGTAACTATGGTGCGCCTGAGGCTAATGTGTCTACACGGGAAGCCTTGGTAATGGTGAATAGTCTCATCTATATCGAGTTAAGCAGTCAACAGGAGTACCTGAAGCTGAAGGCGCGTTATGAGGCTCTACAGCGGTCCCAGAGGAACCTTATGGGAGAAGATCTTGGCCCTCTAAGCAGCAAAGAGCTCGAATCTCTTGAAAGGCAGCTAGATTCGTCCTTGAAGCAAATACGATCAACAAGGACACAGTTCATGCTGGATCAGCTCTCTGATCTTCAACGTAAGGAACACTTGCTAAGTGAGGCTAATAGGTCTCTCAGACAAAGGCAGTTGGAAGGGTATCAAATAAATCCACTCCAACTGAATCCCGGAGTTGAAGACATGGGATACGGAAGGCATCCAGCTCAAACTCAGGGTGATGCCCTCTTTCAACCATTGGAGTGCGAGCCAACGTTACAAATTGGGTATCAGCCTGATCCAGTATCAGTGGTGACAGCAGGCCCAAGCATGAGAAGAATGGGGAAGAAGAAGGTGGAGATAAAGCGAATCGAGAACAAAAGCACTCGGCAAATAACATTCTCGAAGAGGCGGAATGGATTGATGAAGAAAGCTCGCGAGTTGTCGATTCTGTGCGATGCTAAGGTGGCGCTGATTATCTTCTCCAGCACCGGAAAGCTTTACGAGCTCTGCAATGGTGACAGTTTGACCGAGATCCTGAAGCAATATTCGGAACATACAGGAGCCAGTGGTGCAGACTCAAAGGAATTCCGCTTTGAAATAGGAGATATCGTGTCTGGTGCAGCGTTTTCTCAATTGGTCAAAAGGCTCTTTGGTGTTACTGAACTTGAGCATCTGAGTGTGTCTGACCTTATGGAACTAGAGAAACTGGTTCATACTGCTATTTCGCGAATCAGATCAGCAAAGGTTTTACACTCCATTGATAAATTAAAGAACTTCAATTTATTAAGTGTAAAATACATCATTCAACTTTGACCAAGAAAATAAAAAAGTTATTGTTCTACGAATGTGATGCA 1301 0.4504 RRVDGITSLVECKKEREMGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEANVSTREALVMVNSLIYIELSSQQEYLKLKARYEALQRSQRNLMGEDLGPLSSKELESLERQLDSSLKQIRSTRTQFMLDQLSDLQRKEHLLSEANRSLRQRQLEGYQINPLQLNPGVEDMGYGRHPAQTQGDALFQPLECEPTLQIGYQPDPVSVVTAGPSMRRMGKKKVEIKRIENKSTRQITFSKRRNGLMKKARELSILCDAKVALIIFSSTGKLYELCNGDSLTEILKQYSEHTGASGADSKEFRFEIGDIVSGAAFSQLVKRLFGVTELEHLSVSDLMELEKLVHTAISRIRSAKVLHSIDKLKNFNLLSVKYIIQL 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g02792 419 Gene3D - 30 100 IPR036879 GO:0003677|GO:0046983
Pste3g02792 419 SMART madsneu2 262 321 IPR002100 GO:0003677|GO:0046983
Pste3g02792 419 SMART madsneu2 18 77 IPR002100 GO:0003677|GO:0046983
Pste3g02792 419 FunFam MADS-box transcription factor 1 30 103 - -
Pste3g02792 419 Pfam K-box region 118 198 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pste3g02792 419 Coils Coil 178 198 - -
Pste3g02792 419 CDD MADS_MEF2_like 19 93 IPR033896 GO:0000977|GO:0045944
Pste3g02792 419 PANTHER SERUM RESPONSE FACTOR HOMOLOG 20 193 - -
Pste3g02792 419 Coils Coil 152 172 - -
Pste3g02792 419 ProSitePatterns MADS-box domain signature. 20 74 IPR002100 GO:0003677|GO:0046983
Pste3g02792 419 SUPERFAMILY SRF-like 19 92 IPR036879 GO:0003677|GO:0046983
Pste3g02792 419 CDD MADS_MEF2_like 263 338 IPR033896 GO:0000977|GO:0045944
Pste3g02792 419 ProSiteProfiles MADS-box domain profile. 262 322 IPR002100 GO:0003677|GO:0046983
Pste3g02792 419 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 27 74 IPR002100 GO:0003677|GO:0046983
Pste3g02792 419 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 271 317 IPR002100 GO:0003677|GO:0046983
Pste3g02792 419 Gene3D - 274 348 IPR036879 GO:0003677|GO:0046983
Pste3g02792 419 ProSiteProfiles MADS-box domain profile. 18 78 IPR002100 GO:0003677|GO:0046983
Pste3g02792 419 PRINTS MADS domain signature 40 55 IPR002100 GO:0003677|GO:0046983
Pste3g02792 419 PRINTS MADS domain signature 55 76 IPR002100 GO:0003677|GO:0046983
Pste3g02792 419 PRINTS MADS domain signature 20 40 IPR002100 GO:0003677|GO:0046983
Pste3g02792 419 SUPERFAMILY SRF-like 262 337 IPR036879 GO:0003677|GO:0046983
Pste3g02792 419 ProSiteProfiles K-box domain profile. 115 206 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g02792 Pste-Chr3 20673708 20694057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g02792 262 408 MADS-box Gene Family AT1G24260 39.873 2.26e-27 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pste3g02792 K-box 3.2e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g02792 3 20673708 20694057 Pste3g02792 3 20673708 20694057 ECH
Pste7g02413 7 22887223 22892336 Pste3g02792 3 20673708 20694057 PCT