Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g02754 GCAAAAGGGAAAAAAGAAAAAAAAAAAACTCAACTCTGCCGCAATGAATCAATAACTGTCGGCAACAGGCAAATCGTTTCTTTCTAACTGCTTTATCGGGGTCTGAGCTGGCGGCGGACTCCATTTGTTCACCCTCAATAACTGAAAATGCGTGTCTCCGCCGTGTTTATTCTAAGCTTATGCTTGAGAATTGCGGAATCAGAGACTGAGGAGCAGCATTGGTACCCGGGAACCGCCACGTGGTACGGAGAGCCGGAAGGAGACGGTAGCACCGGAGGGGCATGTGGCTACGGGACATTGGTGGACGTGAGGCCGCTGAAGGCAAGAGTGGGTGCAGTGGGGTCAGCGCTGTTTAAGAAGGGGGAAGGGTGCGGGGCTTGCTATAAGGTGAAGTGTTTGGATCATAGCATATGTGCCAAGCGGGCAGTGACGGTTATAATAACGGACGAGTGCCCAGGCTGCCCGTCTGACCGAACGCACTTCGACCTCAGTGGCGCTGCCTTTGGCCGCATGGCCCATGCCGGTGAAAACGGTCAGCTCAGGAACCGAGGCCAAATCCCAGTTATTTACCGAAGAACACCATGCAAGTATGCTGGCAAAAACATTGCTTTCCATGTCAACGAAGGTTCCACACCATTTTGGTTATCTCTTCTGGTGGAGTTTGAAGATGGAGATGGAGACATCGGCACCATGCATATACAAGAAGCGGGATCGAGTGAGTGGCTGCAGATGAATCATGTATGGGGTGCAAATTGGTGCATTATTGGGGGGCCATTAAAAGGACCTTTTTCTGTTAAACTAAGCACATCGACGGGGAGAAGTCTCACTGCCAAAGATGTTATTCCGAGCAAATGGGCTCCAAAAGCCACTTATACTTCTCGCTTAAATTTCCTTTCTTAGCACCAGGTTTGAAACTGAAGAATCACCGTGACCCTTATTCCCAAAGGGAGTAATCATTAATAAAGCACCCTTTTACCCAGTTGAAGTTGCTCAAGGGCCAAGGCAGAGAGTCTTGGCCTTGGTGTCTTTGTGTTTTTTTTTTTTATTAATTAAGTAGCCGTTGAGTGCAAAAGCCTATCCATTGGTCTTTCCTTGCTGTTGTACATCTAATTCTTGTTCTGATCATTTTTGTGTATGCAACTATTTCTCCCAGAAAGTCATTGTAGCCCTCTCCAAAAAGGAGGGAGAGCGTCTAGTGTAGTTTACTGGGACCAGTCGGCTTTAAATGAATCAATATATTTTACAACTCAAGA 1253 0.4733 MRVSAVFILSLCLRIAESETEEQHWYPGTATWYGEPEGDGSTGGACGYGTLVDVRPLKARVGAVGSALFKKGEGCGACYKVKCLDHSICAKRAVTVIITDECPGCPSDRTHFDLSGAAFGRMAHAGENGQLRNRGQIPVIYRRTPCKYAGKNIAFHVNEGSTPFWLSLLVEFEDGDGDIGTMHIQEAGSSEWLQMNHVWGANWCIIGGPLKGPFSVKLSTSTGRSLTAKDVIPSKWAPKATYTSRLNFLS 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g02754 250 CDD DPBB_EXPB_N 25 146 - -
Pste3g02754 250 PANTHER EXPANSIN-B3 9 248 - -
Pste3g02754 250 FunFam Expansin B3 13 147 - -
Pste3g02754 250 Gene3D - 11 146 IPR036908 -
Pste3g02754 250 Gene3D - 147 245 IPR036749 -
Pste3g02754 250 FunFam Beta-expansin 3 148 249 - -
Pste3g02754 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 244 IPR007117 -
Pste3g02754 250 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Pste3g02754 250 PRINTS Expansin/Lol pI family signature 42 60 IPR007118 GO:0005576
Pste3g02754 250 PRINTS Expansin/Lol pI family signature 230 244 IPR007118 GO:0005576
Pste3g02754 250 PRINTS Expansin/Lol pI family signature 24 39 IPR007118 GO:0005576
Pste3g02754 250 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576
Pste3g02754 250 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Pste3g02754 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 151 IPR007112 -
Pste3g02754 250 PRINTS Major pollen allergen Lol pI signature 155 170 IPR005795 GO:0005576|GO:0019953
Pste3g02754 250 PRINTS Major pollen allergen Lol pI signature 220 237 IPR005795 GO:0005576|GO:0019953
Pste3g02754 250 PRINTS Major pollen allergen Lol pI signature 63 74 IPR005795 GO:0005576|GO:0019953
Pste3g02754 250 PRINTS Major pollen allergen Lol pI signature 123 138 IPR005795 GO:0005576|GO:0019953
Pste3g02754 250 PRINTS Major pollen allergen Lol pI signature 171 186 IPR005795 GO:0005576|GO:0019953
Pste3g02754 250 PRINTS Major pollen allergen Lol pI signature 101 116 IPR005795 GO:0005576|GO:0019953
Pste3g02754 250 Pfam Expansin C-terminal domain 153 233 IPR007117 -
Pste3g02754 250 SUPERFAMILY PHL pollen allergen 151 244 IPR036749 -
Pste3g02754 250 SUPERFAMILY Barwin-like endoglucanases 21 150 IPR036908 -
Pste3g02754 250 SMART dpbb_1 61 141 IPR007112 -
Pste3g02754 250 Pfam Lytic transglycolase 64 140 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g02754 Pste-Chr3 20348606 20351714 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g02754 3 186 Expansin Gene Family AT4G28250 70.652 5.62e-92 268
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g02754 3 20348606 20351714 Pste3g02754 3 20348606 20351714 ECH