Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g02750 ATGGCCTTAAACCAGTATTTTGAGGAGGAGTTGGAGTCCTTTGAAGATAAACCATCTCTGGAAACATGGAACTGTGGCAGTGATGATACTTCAGATTCTGATAGAAATGCCTCTTGTGGCTTTGATTGCAACATCTGCCTGGAGAGTGTGCAAGATCCAGTTGTGACTCTCTGTGGTCATCTCTACTGCTGGCCCTGCATTTACAAATGGCTAAATTTGCATAGTGCCTCTTCCGAAAATGGAGAGAATCATGAATGTCCAGTATGCAAATCAGAAATCTCGCAGTCATCACTTATTCCTCTTTATGGCCGTGGCCAAACCGCCATACCTTCTAAAGGCAAAGGTCACCAAGTAGGGCTTGTCATACCAAGAAGACCCCTTGGTCCTTCATGGGTGGCCAACTTAACAAGATCACATGATTCTGAAGCTGTTTCACAACATGTTTTTCATCGTCATTATCCGAATCATCCTCAACAGTCCAACTCAATGCATGGCAGTTACACTTCACCAATGTTCAACTCAGGTGGTTCACTAGCAAATACATTTGATACAACACATGGAGTCTTAGGTGAGATGATATATACAAGGGTCTTTGGAAACCAGATGACTAACAATACAAGCAGTATGCGGATTCTGCCAGATTCATCTTATATGTTGGAGTTGTTTGGTGATGAAATATTTGTAATTAGGCCCGTTTGGCGTACATAG 708 0.4251 MALNQYFEEELESFEDKPSLETWNCGSDDTSDSDRNASCGFDCNICLESVQDPVVTLCGHLYCWPCIYKWLNLHSASSENGENHECPVCKSEISQSSLIPLYGRGQTAIPSKGKGHQVGLVIPRRPLGPSWVANLTRSHDSEAVSQHVFHRHYPNHPQQSNSMHGSYTSPMFNSGGSLANTFDTTHGVLGEMIYTRVFGNQMTNNTSSMRILPDSSYMLELFGDEIFVIRPVWRT 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g02750 235 SMART ring_2 43 89 IPR001841 -
Pste3g02750 235 ProSiteProfiles Zinc finger RING-type profile. 43 90 IPR001841 -
Pste3g02750 235 Pfam Zinc finger, C3HC4 type (RING finger) 43 89 IPR018957 GO:0046872
Pste3g02750 235 ProSitePatterns Zinc finger RING-type signature. 58 67 IPR017907 -
Pste3g02750 235 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 15 210 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pste3g02750 235 CDD RING-HC_AtRMA-like 41 91 - -
Pste3g02750 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 26 103 IPR013083 -
Pste3g02750 235 SUPERFAMILY RING/U-box 37 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g02750 Pste-Chr3 20295913 20296804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g02750 36 199 C3H Transcription Factor Family AT4G27470 40.588 6.75e-34 120
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g02750 3 20295913 20296804 Pste3g02750 3 20295913 20296804 ECH