Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g02742 GTGTAGGGGAGCCAATTCTTGGGTGTGAGAAGGTACCCAAATAACCAAGCCGCCATGGTGAAGTACTCGAGGGAGCCTGACAATCCCACCAAGTCTTGCAAGGCTAGAGGCTCCGACCTTAGGGTTCATTTCAAGAACACTAGGGAAACCGCCTTTGCAATCAGGAAGTTGCCTTTGGTTAAGGCTAAAAGGTACTTGGAAGATGTTCTTGCCCACAAACAAGCCATTCCATTTAGACGTTTCTGTCGTGGTGTTGGAAGGACAGCCCAAGCAAAGAATAGACACTCTAATGGCCAAGGACGATGGCCTGTTAAATCAGCCAAATTCATCCTTGATTTGCTTAAGAATGCTGAGAGCAATGCTGAAGTGAAAGGTTTGGATGTTGATGCGTTGTACATTTCTCATATCCAAGTCAATCAAGCGCAGAAGCAAAGACGCCGAACATACAGAGCTCATGGAAGAATCAATCCATATATGTCATCTCCGTGCCACATAGAATTGATATTGTCAGAAAAGGAAGAACCTGTTAAGAAGGAGCCCGAGACCAAGTTGGCAACAAGCAAGAAGTCCCAAGCTCTTAGAAGTGGTTCTTCTTCTTAGGTTATTTCATAATTGTTTGAGGCGCGATATTCCTAGATTATATCAAAGAGGGATGATTTGTTGTTTGTTTTATTTTTCTGTTATTGTTTGGTATGGGTTTTTGTTTCATACTATGCTTCAAATTAAATTCGAGTTAATTGGAAAACTTGATTTAGGATTTTTGGACTCGTGGTTATCTCCTGATATACATAGGGTATGTTTGGTTTAATGTAGGATTAAATGGGAGGACTCATTTTTTTATGCAATGGTTGTTATGAAGTTGAAAGGCTTTCAACG 876 0.411 MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETKLATSKKSQALRSGSSS 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g02742 181 Gene3D Ribosomal protein L22/L17 1 180 IPR036394 GO:0003735|GO:0005840|GO:0006412
Pste3g02742 181 MobiDBLite consensus disorder prediction 156 181 - -
Pste3g02742 181 ProSitePatterns Ribosomal protein L22 signature. 127 151 IPR018260 GO:0003735|GO:0005840|GO:0006412
Pste3g02742 181 Pfam Ribosomal protein L22p/L17e 17 152 IPR001063 GO:0003735|GO:0005840|GO:0006412
Pste3g02742 181 PANTHER 60S RIBOSOMAL PROTEIN L17 1 174 IPR005721 GO:0003735|GO:0006412|GO:0015934
Pste3g02742 181 SUPERFAMILY Ribosomal protein L22 1 154 IPR036394 GO:0003735|GO:0005840|GO:0006412
Pste3g02742 181 NCBIfam 50S ribosomal protein L22 4 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Pste3g02742 181 FunFam 60S ribosomal protein L17 1 175 - -
Pste3g02742 181 CDD Ribosomal_L22 15 151 IPR001063 GO:0003735|GO:0005840|GO:0006412
Pste3g02742 181 Hamap 50S ribosomal protein L22 [rplV]. 2 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g02742 Pste-Chr3 20229778 20232774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g02742 1 174 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 89.080 4.37e-117 327
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g02742 3 20229778 20232774 Pste3g02742 3 20229778 20232774 ECH
Pste7g02395 7 22712098 22714092 Pste3g02742 3 20229778 20232774 PCT