Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g02724 ATGGATCAACAAAAGGGAACTCAACCTTCTTCTTCATCCAAAGTGGAAAGAAAGGTTGCAGAGAAAAACAGGAGAAACCAGATGAAAAACCTCTATTCCAAACTCAACTCTCTTCTCCCTAACTTTAATCCCAAGGAAGGGATGGCACTGCCTGGTAAAATAGATGAAGCAATAAACTACATCAAAAGCCTAGAGACACAGGTGAAGATGGCGAAGGAGAAGAAAGAAAGGTTAATGAAAAGGAAGAGAACTCATAGTGTCTGCTCCAGTGCTTCTGAAGCACAAGGACGTCTAAAACCGCCAAAAATCGAGATTAATGAAACCGGTGCAACACTTGAAGTCATTCTAATATGCGGGGTTGATAACCAGTTCATGTTCTGTGAAATTATTCGAATATTACATGAAGAAAATGTCGAGGTCGTAAATGCCAACTCTTCAACGTTTGGAGATTCAGTGATCCATGTTGTGCATGGGGAGGTTCCGCAACCTATCTTTCCATTTGGAGCAACTAAAGTGAGTGAGAAGCTGAAGTGGTTTGTTAATGGTTCCTTCAGTGATATTGAAATGGAGCCTGAATTGTGGGATTTTGACATAGGTGCTGCTGAGACCTGGGGGCTTCTTGATCTTACACTAGACAATGGCTTACCACCTAATTAATCCTTTGTAAAATCAAGACGCTGATTGGACATAATTAAGGGTAGTCATGCTCTCAGCCTCTGATATGTAAGAATTAAGTTGCATATTGGACATAATTTCCCAACAACATGCATGCTATTAAGTATCACAAAATCTTTTCCCTTTCTCTCATCTACTTCAAACATCTTATTATTA 831 0.3971 MDQQKGTQPSSSSKVERKVAEKNRRNQMKNLYSKLNSLLPNFNPKEGMALPGKIDEAINYIKSLETQVKMAKEKKERLMKRKRTHSVCSSASEAQGRLKPPKIEINETGATLEVILICGVDNQFMFCEIIRILHEENVEVVNANSSTFGDSVIHVVHGEVPQPIFPFGATKVSEKLKWFVNGSFSDIEMEPELWDFDIGAAETWGLLDLTLDNGLPPN 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g02724 218 MobiDBLite consensus disorder prediction 1 26 - -
Pste3g02724 218 Coils Coil 54 81 - -
Pste3g02724 218 Pfam Helix-loop-helix DNA-binding domain 14 64 IPR011598 GO:0046983
Pste3g02724 218 Gene3D - 5 94 IPR036638 GO:0046983
Pste3g02724 218 SMART finulus 18 70 IPR011598 GO:0046983
Pste3g02724 218 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 11 89 IPR036638 GO:0046983
Pste3g02724 218 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 11 178 - -
Pste3g02724 218 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 12 64 IPR011598 GO:0046983
Pste3g02724 218 FunFam Transcription factor bHLH162 5 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g02724 Pste-Chr3 20044626 20045717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g02724 12 182 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 40.000 2.02e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste3g02724 HLH 5e-05 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g02724 3 20044626 20045717 Pste3g02724 3 20044626 20045717 ECH