Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g02699 GTTGGTTTTGTTGGGTTTTATTTCTCCGCCCTAACCCCGTTTCTAAACTCCTCCTCTTCTTCTTCTGACTCACTTGTTGCAGGGTAACACATGGCTTTGTTATTCAAGGATCCGTCGAAGCTTTCGGCGTATCGAGATTTTAGGTTCCCCGGAACGCAAGAGGAGTTTGAGCACGCGCTTCAAACCTCAACCACCGTTTACGTTGGGAACATGTCATTTTACACGACTGAGGAGCAAGTTTACGAGCTCTTTTCTCGGGCTGGGGAAATAAAAAAGATTATCATGGGTTTGGATAAGAACACCAAAACGCCCTGCGGCTTCTGTTTCGTTTTATATTATTCCCATGAAGATACTGAGGATGCTTGCAAATACATAAGTGGAACGATACTGGATGATCGTCCAATTCGTGTTGATTTTGATTGGGGATTTCAAGATGGAAGACAATGGGGGCGTGTTGATTTGTGCAGAGGTGGTTATGGGAAGCTGGTTCAGAAAGAGTTAGAAGTACAAAGACAGCTTGTAGATTATGGTGCAGGTTCTTTGGGTTCTTTTCCACCAGTTATTCCAACTTCTTGTTTATCAATATTGGCAAATGGTGCTGCCAGATTGCTAAACTGGCATGGAGTGGCCCATGGCCACTACCCGCAAGACCATTGCGACCTTGCTTGCCTGTTATCGCTTATCATCAGAGCAGGGGCTACATCAAAATATAATGGTAGACATGGTGGAAGTCGTGGTCATGGTGGTTCCCATCGGCATGGTAGAGATTACTATAGGAAGAGACACCGAGATGATGACCGCCACACACACGAGTCCTCAAAAAGAACTTCAGATCATGAATCTCGGAGGAACAGTGACCATGAATCTAGACCGGAAAAAAATCCCCGGTTTCGTGAGAGTGGTGATTCCGATGATGACGAGGACGATGATAGAAAAAGACGGGCTTAACCAGAATTTCATACTTGATCAAGTTGTTAAAAATTATAGAATCTTTCTTCTGACATGATTGAAGGTTGGATGATTGTATAATGTATACTATTGCAAATTGCAAAGATCTTACTGTTAGTTTAACCTTGTTTGAAATTCTTAGCTGGATTTGCTGCATATGTATAGCAGTGCTATTTTTACTGTGTTTCTATTTGTCCTATGCTTTTATCTGCAAACCATATTAATCAGGTTTTGTTTTAGTGATCT 1194 0.4221 MALLFKDPSKLSAYRDFRFPGTQEEFEHALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSHEDTEDACKYISGTILDDRPIRVDFDWGFQDGRQWGRVDLCRGGYGKLVQKELEVQRQLVDYGAGSLGSFPPVIPTSCLSILANGAARLLNWHGVAHGHYPQDHCDLACLLSLIIRAGATSKYNGRHGGSRGHGGSHRHGRDYYRKRHRDDDRHTHESSKRTSDHESRRNSDHESRPEKNPRFRESGDSDDDEDDDRKRRA 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g02699 285 MobiDBLite consensus disorder prediction 229 285 - -
Pste3g02699 285 CDD RRM_NCBP2 36 113 IPR034148 -
Pste3g02699 285 PANTHER 20 KD NUCLEAR CAP BINDING PROTEIN 2 283 IPR027157 GO:0000339|GO:0005846|GO:0045292
Pste3g02699 285 Gene3D - 6 138 IPR012677 -
Pste3g02699 285 MobiDBLite consensus disorder prediction 205 285 - -
Pste3g02699 285 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Pste3g02699 285 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Pste3g02699 285 SUPERFAMILY RNA-binding domain, RBD 27 124 IPR035979 GO:0003676
Pste3g02699 285 SMART rrm1_1 35 108 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g02699 Pste-Chr3 19856386 19861722 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g02699 31 109 Eukaryotic Initiation Factors Gene Family AT1G49760 29.114 3.73e-07 49.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g02699 3 19856386 19861722 Pste3g02699 3 19856386 19861722 ECH