Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g02689 GAGGGAGGTTGAGAAAGACTGCAGTATTCTCTCATGCAAAAAGAAAGCACCAAAAAAAGTGAGGGAGAATTTAATTCCTTCCCACCCCTCAACAAAAACTGCCATGAGGGGAGCAACCTTTAGAAGAGACAACATTTTCTTTTCCCCTTCTGTTTAATTATTACTACTTTAAATTCATCTCTTATAGCTCAACCTCTCTCCCAGTCTTCCTTGGTCCATCCTTGTTTCAGTTTCTGTTCCATTTGGTTCATAGCAGCATAAGAGGAAACTAGAGAAGAGATATCTATAAATGGTATGAGGGTGAAAAGAGAATAACAAGGAAATGACTCAGTGCAGTTATCCTGAAAACAACCATAGCATCATTGTGGAGAGGCGCAAAGATAGCTTGATCAGAACATGTCCTACATGTGGTCATCATATCAAATGCCAAGAGCAGGCTGCTGGAATTCATGACTTGCCTGGACTTCCTGCTGGAGTGAAGTTTGATCCTACTGATCAGGAAATTCTTGAACATTTAGAAGCAAAGGTTCGGTCTGATATTCACAAGCTTCACCCGTTAATTGATGAGTTCATCCCTAGTCTTGAAGGGGAGAATGGAATCTGCTGTACCCATCCAGAGAGGTTGCCAGGAGTTAGCAAAGATGGCTTGATCCGACATTTCTTTCACAGACCTTCCAAAGCATACACGACTGGAACAAGGAAAAGGAGAAAGGTGCACACAGATGCTGATGGCAGTGAGACACGGTGGCACAAAACAGGTAAGACTAGGCCAGTCTTCATAAGAGGCAAGTTAAAAGGGTACAAGAAAATTCTTGTACTTTACACTAACTACAGAAAACAAAGGAAGCCCGAGAAAACAAACTGGGTCATGCACCAGTACCACCTCGGCAATAATGAAGAGGAGAAGGAAGGGGAGTTGGTAGTCTCCAAAGTTTTCTATCAAACACAACCTAGACAATGTGGTTCAGTGATGAAAGACTCATATCCTGCAAAACTAAATGGTGAAGGTGTGCATGAGGTAACTAATCATAAAAACACCGGGTTTGTCGAGTACTACAATAATTCTTTTGTATCCTTTGATCAAGGGGACCAGCATAGGTCCAGCACTGCACAATTAGTCTCCCATTTCGCTGTTCATGATGGTGCTACTTTCATTCCTTGAAAGTGGTTGAAGAGGGAAAGAGGGGGGAAGGAGCATTGCATTACCATTCTATCCTGCAATGAAGAAATAAGTTAATAACCAACCATATATAGTTAGGAGGGAAACGGTGACACTCAATAAGGAGAATCTGCTTCATCAGAAAGCTAGTGGTCAGATACTTCAATTGAGGAAAGAAAAGGGATTACGGGTAAAGAAAAAGACAAAATGATTTGGCTGTAACTTCGTTTTCGTTTTTTATTCTTCTAAATTTTTTGAAGGGTAGTTGTTATCATGCTTTGTACAGTGACACGAAAAATTATCTCAATTGTCCGTATTTGGGTAAATACTAACCAATCAGTC 1501 0.4084 MTQCSYPENNHSIIVERRKDSLIRTCPTCGHHIKCQEQAAGIHDLPGLPAGVKFDPTDQEILEHLEAKVRSDIHKLHPLIDEFIPSLEGENGICCTHPERLPGVSKDGLIRHFFHRPSKAYTTGTRKRRKVHTDADGSETRWHKTGKTRPVFIRGKLKGYKKILVLYTNYRKQRKPEKTNWVMHQYHLGNNEEEKEGELVVSKVFYQTQPRQCGSVMKDSYPAKLNGEGVHEVTNHKNTGFVEYYNNSFVSFDQGDQHRSSTAQLVSHFAVHDGATFIP 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g02689 279 Gene3D NAC domain 57 211 IPR036093 GO:0003677|GO:0006355
Pste3g02689 279 FunFam NAC domain-containing protein 73 57 211 - -
Pste3g02689 279 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 20 237 IPR044799 GO:0003700
Pste3g02689 279 ProSiteProfiles NAC domain profile. 48 207 IPR003441 GO:0003677|GO:0006355
Pste3g02689 279 SUPERFAMILY NAC domain 43 207 IPR036093 GO:0003677|GO:0006355
Pste3g02689 279 Pfam No apical meristem (NAM) protein 49 188 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g02689 Pste-Chr3 19763932 19766026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g02689 24 224 NAC Transcription Factor Family AT4G28500 79.208 6.76e-117 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pste3g02689 NAM 8.9e-22 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g02689 3 19763932 19766026 Pste3g02689 3 19763932 19766026 ECH