Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g02583 TGGGAAATGGGAAATGGGAAATGGGAAATGGGAAGTGTGGGATGGGATGAGTTGAGAAGGTGATTGGTGGATAGAGATTGTGGTCAGAACTCACAGTCACATCACTCACATAGCCATAGATAGATTCCCCTTTTCATTTTGGCAGAAACAACCCTCTCTTTTACTCCACACTGCACTCACTAAAATTTCAATTAAAAATAGAGGAAAAACAGAACCCGCCAAATATTCGCTATGGTTTCCCCGGAAAACAACAACAATTGGCTGTTGGATTACCCGTTGATCGACGTCGGAGATCCCGCCTTCTCCTGGCCCCCACCCCCCTCCAATGTCAGTCTTCAAATTCATCCCTCGCTTCACGATTCTGATCCTCTCAACAAGAAGAGGGGTAGATCTGATTCATGTTGTGCTTCTAGCTCAAAGGCATGCCGGGAGAAGCTGCGAAGAGATAGGCTTAATGACAAGTTTGTTGAATTGGTCTCCATCTTGGAGCCTGGAAGGGCTCCCAAAACAGACAAGGCTGCTATTCTGATTGATGCTGTCCGAATGGTGACACAGCTGCGGGATGAAGCCAAGAAGTTGAAAGACTCAAATATGAATCTTCAAGAGAAGATTAAAGAGTTAAAGGCTGAGAAGAATGAACTTCGTGATGAGAAACAGAGGCTCAAGGCTGAGAAAGAGAAGTTGGAGATGCAGGTAAAATCAATGAACGCCCAACCTGCTTTCTTGCCACCTCCTGCAATCCCTGCTGCATTTGCTCCACAAGCCCAAGCCCCCGGCAACAAGTTGGTGCCTTTCATTGGTTATCCGGGAGTTGCTATGTGGCAATTTATGCCTCCAGCAGCTGTGGATACCTCACAGGATCATGTACTCCGTCCACCAGTTGCCTAAGTTGGCATTGTACAATTATTTGGGCTTCCATTTTGGCTCAAAAGTTGTATTCATTTTCCCATAGGTTCTTCCCTTTTTAGTTATATCTTCCAAGTGTTCCCTTTTTTGTTATATCTTCCAAGTGTTCCAAAGTAACTAACCGGATTCAGTGGTGGCTTTGACTGTATTTGACATCTGATACTTCTATCTTATGAAGCAATGGCTGGTGTTTGCATGTAAATGTTAATAAGCTTGGCTGGCTGTCACCCCGGATATAAATACTATTAAAAGGTCAAGCACAACTTGCTATTTTCATAGTTTATCCCGCAGAACCAAAAACAGTAGAAGCGTCAATGCTGCAGTACTTTTGAAGCAGCCACATTTATTCTTCGGGAGGAAAAAAATGAAATAAATTCAAACTAGTGGGAGTTTCTCCATCATAACAATGAATGTCAA 1323 0.4354 MVSPENNNNWLLDYPLIDVGDPAFSWPPPPSNVSLQIHPSLHDSDPLNKKRGRSDSCCASSSKACREKLRRDRLNDKFVELVSILEPGRAPKTDKAAILIDAVRMVTQLRDEAKKLKDSNMNLQEKIKELKAEKNELRDEKQRLKAEKEKLEMQVKSMNAQPAFLPPPAIPAAFAPQAQAPGNKLVPFIGYPGVAMWQFMPPAAVDTSQDHVLRPPVA 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g02583 218 Coils Coil 106 161 - -
Pste3g02583 218 PANTHER BHLH TRANSCRIPTION FACTOR 3 218 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Pste3g02583 218 Gene3D - 49 107 IPR036638 GO:0046983
Pste3g02583 218 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 62 128 IPR036638 GO:0046983
Pste3g02583 218 CDD bHLH_AtILR3_like 63 138 - -
Pste3g02583 218 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 58 109 IPR011598 GO:0046983
Pste3g02583 218 FunFam Transcription factor bHLH104 61 144 - -
Pste3g02583 218 Pfam Helix-loop-helix DNA-binding domain 62 109 IPR011598 GO:0046983
Pste3g02583 218 Gene3D arf6 gtpase in complex with a specific effector, jip4 108 162 - -
Pste3g02583 218 SMART finulus 64 115 IPR011598 GO:0046983
Pste3g02583 218 MobiDBLite consensus disorder prediction 37 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g02583 Pste-Chr3 18762813 18765347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g02583 1 218 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 67.234 1.36e-100 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste3g02583 HLH 2.1e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g02583 3 18762813 18765347 Pste3g02583 3 18762813 18765347 ECH
Pste3g02583 3 18762813 18765347 Pste1g03740 1 18294176 18297797 PCT