Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g02563 ATGGATTCGCAACAGCTATTCAGTTTCGGTAGTGTTACAAGTGCAGGATTACCTTACATGTCATCTTTTCCCACAGTTCCATCGCTACCGAAAAGGCTACTTGGATCCTTGAAATATGACACAGGAAACTCACCCAATTCACCCTTTTCCACTCACTTCGATTCTGATACTCTTTCTGCATTGAGTGACAGCCAGGAGCAATACAGCCCTGGAGAAATCCTCTCTGGTGTTAGCCCCTCGTGCAACTCTTCACTGGAAACTAGCCATTATATGTATAGACCAAGCTCATCTGTGGACAGTCTCAGAGACAGTTTCCCACTATATTCTTCTACTAACTCTCTTCTACAGAACGTGAGCTGTAATCAGAAAATTCAACACGCTTTGCTGGAGCTAGAAACTGTTCTTATGGCCCCTGATGATGATCAAGTTACTGCACCAAATTCAATGGTCGAGAGCAGCAGGCCAATATCACCTGACCAGAGATACGTGTCGTGGAGCGATGAGAACTATGGCTCACAATATACTCTCAGTCAGCCATCATATGTTACCAGCAATAGGCAGTCAAGTGAAGTTGTACATGTAGAGAAACGGCAAAAGTTGATGGTAGAAGCAACACTACAAACTTTCCCACCGAACAATTTGAAGCAATTGCTGATTGTATGTGCCAAAGCCCTGTCAGAAAACAACATGAAAGATTTTGATCAATTGGTAAGAAAGGCTAGAGATGCTGTCTCCATCAATGGGGAGCCAATCCAGCGGCTTGGTGCTTACATGGTAGAAGGGCTTGTTGCAAGGAAGGAAGCATCAGGGAATAGCATCTATCATGCCCTTAGGTGCAGAGAGCCTGAGCCTGAAGGTGAAGAATTACTGTCTTCCATGCAACTACTGTTTGAGATCTGCCCTTACTTAAAATTTGGATACATGGCCGCCAATGGAGCCATTGCGGAAGCATGCAGAAACGAAGATCGCATACACATCATAGACTTTCAAATTGCTCAGGGAACTCAGTGGATGACTCTTCTTCAAGCCCTTGCAGCAAGACCTGGTGGTGCTCCTCATGTTCGGATCACGGGGATTGATGATCCTGTTTCCAAATATGCTCGAGGCGACGGACTAGAGATCGTTGGGAAAAGGTTGGCTTTGATGTCAGAGAAATTTGGCATCCCAGTTGAGTTTCATGGAGTGCCTGTTTTTGCTCCAGATGTGACAAGGGAAATGCTACGTATAAGGCCAGGAGAGGCATTGGCTGTGAACTTCCCATTGCAATTACATCATACAGCTGATGAGAGTGTTCATGTGAGTAACCCAAGGGATGGACTTTTGAGATTGGTGAAGTCACTTTCTCCCAAGGTGACCACACTGGTGGAGCAGGAATCAAACACAAACACAACTCCTTTCTTCAACAGGTTTATTGAAACTCTGGATTACTACTTGGCAATCTTTGAGTCCATTGATGTCTCCCTCCCACGAGATAGAAAGGAGAGGATTAACGTGGAGCAACATTGTCTGGCCAGGGATATTGTGAATATTATTGCTTGTGAAGGCAAGGAAAGGGTTGAGAGACATGAACTATTCGGCAAGTGGAAGTCAAGGTTAACAATGGCTGGCTTTCGTCAGTGTCCTTTGAGCTCTTATGTGAATTCTGTCATAAGAAGCCTTCTGAGGTGCTATTCAGAACATTATACACTAGTGGAGAAGGATGGAGCCATGTTGTTGGGGTGGAAGGACAGAAATTTGATATCAGCTTCAGCATGGCATTGCTAG 1764 0.449 MDSQQLFSFGSVTSAGLPYMSSFPTVPSLPKRLLGSLKYDTGNSPNSPFSTHFDSDTLSALSDSQEQYSPGEILSGVSPSCNSSLETSHYMYRPSSSVDSLRDSFPLYSSTNSLLQNVSCNQKIQHALLELETVLMAPDDDQVTAPNSMVESSRPISPDQRYVSWSDENYGSQYTLSQPSYVTSNRQSSEVVHVEKRQKLMVEATLQTFPPNNLKQLLIVCAKALSENNMKDFDQLVRKARDAVSINGEPIQRLGAYMVEGLVARKEASGNSIYHALRCREPEPEGEELLSSMQLLFEICPYLKFGYMAANGAIAEACRNEDRIHIIDFQIAQGTQWMTLLQALAARPGGAPHVRITGIDDPVSKYARGDGLEIVGKRLALMSEKFGIPVEFHGVPVFAPDVTREMLRIRPGEALAVNFPLQLHHTADESVHVSNPRDGLLRLVKSLSPKVTTLVEQESNTNTTPFFNRFIETLDYYLAIFESIDVSLPRDRKERINVEQHCLARDIVNIIACEGKERVERHELFGKWKSRLTMAGFRQCPLSSYVNSVIRSLLRCYSEHYTLVEKDGAMLLGWKDRNLISASAWHC 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g02563 587 Pfam GRAS domain family 214 585 IPR005202 -
Pste3g02563 587 ProSiteProfiles GRAS family profile. 205 586 IPR005202 -
Pste3g02563 587 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 168 582 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g02563 Pste-Chr3 18572333 18574096 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g02563 204 585 GRAS Transcription Factor Family AT5G48150 62.924 3.51e-172 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pste3g02563 GRAS 8.3e-129 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g02563 3 18572333 18574096 Pste3g02563 3 18572333 18574096 ECH
Pste3g02563 3 18572333 18574096 Pste1g03755 1 18422983 18424689 PCT