Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g02547 CAATATAAATACTGAGAAGTAGCGAACCGTTTTCCATTCATTTTTTTCTCAAACTCAACACTGATCATATCACAACACAACACAACACACATTCAAGAATCTGATGCACCCAAATAGTACATAGTTTAGTTTTTATGATTTTAACACATATCTTCATAATTTATAGATATATAGTGGAGGCCGAAGCACACAACAATTGTTGGAGTCATCATCAAACATGGCAGATGATCAATTTCCCGCAAGTGGGAACTGGTGGGACACAGCAAGAAGCGTGAGGTATGAGAGTGGGGCATCACCGTCATCTTCTTCTGCCATCACCAGCATAGGCAACTTTGGTTGGCAAGCTTCAGATATGGCAGACATGAAGCCAAGGTCATCCATGGACTCTTCTTCTGTGGTTTTCCATGACACACAGAATAAGCTTCAACCCCCAGATTCTGACACTTCCACTGACCCCAACTTGCATATGATGGGTTTAGGCCTTTCTTCCCAAGCCATGGATTGGAATCAAGCATCTCTGTTGAGAGGAGAGAAGGGAACGGAGAACAACAGCTTCCGGTCCATGTTGCAAGAGAATTTGAGCTCATCAAGAAACAATTATCAGCAAGAAACTGGGATGGGTTTGTCTCAAGAAGCTCTATGGAGGTCGGAGAAGATGTTCTCTACAGAGTCTTCAAGCAATGAGTTCAAGCAAGTGAATAGGGGTGGTTTCTCTTTAGATCAAAGCCAGTTTAGTCCTCAATACAGCTCTGGAGACAGCACCGTGACAAGCCAAGGGTTACCCTCTTCTAACTTTCAGATGGATTCCTCAGCCTTATATGGGACGCCTTCAATATTGCAAGGACTATTGGGACCTGATCAGAATAACCAACCCCAACAACTACCACCTTCTTCCTTTGAGAACCGCCCCATGAGTTTTCCATATCCAACAAGCTATGGATTAAACTCTAGTGAGTTGGTACCTTCTTGGTCCAAAGTTACTCAGTTCTTGAGAGCTTCACCTCCAAAACAACCACCCAATAACCAGTTGCATTTCACTAACAACGCACCCTTTTGGAACGCTTCTGAGGCTCCAAACATCAAAGATGTTAGGTCTAGCTTCTTCCCCTCATTGCAACCCCCCTTCTCTACGCCAAATTTTGAAGTACAGTCAAAGAATATATCTGAAGGAAGGGATTCGGGTACTGCGATAAAGAAAAGTGGGAATGAGCCAGCATCCAAAAGGACCCGTAACGAAACACCATCTCCTTTGCCAGCTTTTAAGGTGAGAAAAGAGAAGATGGGGGACAGAATCACTGCACTCCAACAATTGGTGTCGCCTTTCGGAAAGACTGATACAGCCTCAGTGCTCTCTGAAGCCATTGAATACATCAAATTCCTCCACGAACAGGTCACTGCTTTAAGTACCCCGTATATGAAAAGTGGAGCACCAATACAGATTCAGCAGAATACCGGTAAATCTAAGGAAGCTGAGGGTCCAAAGCAGGATCTTAGAAGCCGAGGGCTATGCTTGGTTCCTGTTTCGAGTACCTTTCCAGTGACTCATGAGACCACAGTTGATTTTTGGACACCAACATTCGGAGGAGCTTCAAGATAACGATAGTAATAATGGTAGCATGTGTTTTAGGTCTTCAATGTTCCATCAAAATTATTTTGTTTTATATTTTAAAAGGAATGGTTTTGGTCTTCATATTTTTATAATTGATGAATTTTGTCGTCTTTACAAAATAATAGTATAAAAGATAAGGGACGAAATTCACCGATTATAAATATTATGAGGGCCAAATTTTGATGGAAATTAAAGAAACTAAAACAAATTATACCCTAATAATAACAATAATGGATGGATGGATGGAGAATTGGGACACGGAACCAATACCCTGCAAGTAGGTAGCTAGGACATGCATGTAGTACCTTATCACACACCTGGCCAAGTTGGGAATGATATGATGAAAGAAAAGAGAAACAGGAAAGAGGACACGGAAGCCCACATAAATATATAAAGGTAGTTAGTTCTGCTGGGAAGAGGAAAGGATGTATAAAAAAGAGATGGGGGAAAATGTGTTTGAAAGAGAAAGAAAGCGAAATGACCCTTCAAAAGATAGCCATAGTTGGACCAACTACATTCAGAATTATGCGGGGTTTGGGCAATATTGGGACCATTGGGGGCAGAATAAGTTGTATGTAATAATTGAAGAATTATGCTTAGAGTAGTGGGATTAATTAGGCATGACAAAATTGCTGAATATAGAGAAAGTTGTTACTTCCTAGACTAAACAAGAGGGAGAAGTTGTTGTTAGCACAAGATAAAAGCAGCTTTATTAATTTCTTGTTGCTATATTGTGAATAGAGCTGGCACTAAGTAACTTTAACTCAAGAGAAAATGAATTTAATTTGAGAGAATCATTGAAGTATAGAATAGAAGAGTGAGTGAAGAGATGCGTCATTCGATAGGAAACCTCACTTTTTATTTGTTTATGTCTTTGGAATAAGTAAGTGGAAGTCAGAGGGTGGCCCACACGCCCCCTTTTAGGGTTTTCAAATAAAATGTTTATTTATGAGAAAGATTAATTAGAAAGATATTTATATTTTGCAGA 2597 0.4016 MADDQFPASGNWWDTARSVRYESGASPSSSSAITSIGNFGWQASDMADMKPRSSMDSSSVVFHDTQNKLQPPDSDTSTDPNLHMMGLGLSSQAMDWNQASLLRGEKGTENNSFRSMLQENLSSSRNNYQQETGMGLSQEALWRSEKMFSTESSSNEFKQVNRGGFSLDQSQFSPQYSSGDSTVTSQGLPSSNFQMDSSALYGTPSILQGLLGPDQNNQPQQLPPSSFENRPMSFPYPTSYGLNSSELVPSWSKVTQFLRASPPKQPPNNQLHFTNNAPFWNASEAPNIKDVRSSFFPSLQPPFSTPNFEVQSKNISEGRDSGTAIKKSGNEPASKRTRNETPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTALSTPYMKSGAPIQIQQNTGKSKEAEGPKQDLRSRGLCLVPVSSTFPVTHETTVDFWTPTFGGASR 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g02547 459 SMART finulus 350 394 IPR011598 GO:0046983
Pste3g02547 459 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 349 404 IPR036638 GO:0046983
Pste3g02547 459 MobiDBLite consensus disorder prediction 315 341 - -
Pste3g02547 459 Gene3D - 349 409 IPR036638 GO:0046983
Pste3g02547 459 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 124 440 - -
Pste3g02547 459 MobiDBLite consensus disorder prediction 51 80 - -
Pste3g02547 459 MobiDBLite consensus disorder prediction 315 345 - -
Pste3g02547 459 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 339 388 IPR011598 GO:0046983
Pste3g02547 459 MobiDBLite consensus disorder prediction 168 189 - -
Pste3g02547 459 MobiDBLite consensus disorder prediction 204 230 - -
Pste3g02547 459 CDD bHLH_AtbHLH_like 345 396 IPR045239 -
Pste3g02547 459 MobiDBLite consensus disorder prediction 406 425 - -
Pste3g02547 459 FunFam Transcription factor bHLH123 family 349 411 - -
Pste3g02547 459 MobiDBLite consensus disorder prediction 47 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g02547 Pste-Chr3 18303998 18308951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g02547 103 459 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 47.277 1.89e-78 248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g02547 3 18303998 18308951 Pste3g02547 3 18303998 18308951 ECH