Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g02526 ATGATGACTCCAAACTTGAACGTGGAACCTGAAAAGCACTCAGATGGCAGCAGCCAAGTTGCTTCCAATGTATCCCTGAATGAAGCATCTCATGATCTTACAAAAGGCAGCACCAGCACTTCCTCCTGCCTCACAAAGGATGAAACTGATCCAGGTTCTATTACCCTTGACTTGACACTCAACTTTAATTCCAGTGATGGTGAGTTGAAAGGTTCAAGTGATGGTAGCAGTGAAGTGGGAGCTGAGGCTCCTGCTTCAGCATCAGCAACTCCCAGGATTTTTTCTTGTAACTACTGCAGGAGGAAGTTCTACAGCTCACAGGCATTAGGGGGTCATCAAAATGCTCACAAAAGGGAGAGGACAATGGCTAAACGCGCAATGAGGATGGGAATGTTCACTGAGAGGTATACAAGCTTGGCCTCACTACCTCTTCATGGTTCACCTTTTCGGTCTCTTGGGCTTGAAGCTCATTCTGCAATGCACCGAAGACCCATGCCATCCTCTCTGAGGGTTCCTGATATCAGAGCTGCTGCAAAATTTGAGAGAAACCATTTCGGATCATTAGTTTTCATGGAAGATGATGATGTTGGATTCTTTTGGCCTGGTAGTTTCAGACAGGTAGACCAAGGAGCTAGTGTTAATGTAGGACATGCTCAAAGTTCAAATGCTAGTTTAGTTCCAACGGTGCCCCTTCCACCACAAGCTTCTGCAACTCCAGATCTCACATTGAAGCTTTAA 738 0.458 MMTPNLNVEPEKHSDGSSQVASNVSLNEASHDLTKGSTSTSSCLTKDETDPGSITLDLTLNFNSSDGELKGSSDGSSEVGAEAPASASATPRIFSCNYCRRKFYSSQALGGHQNAHKRERTMAKRAMRMGMFTERYTSLASLPLHGSPFRSLGLEAHSAMHRRPMPSSLRVPDIRAAAKFERNHFGSLVFMEDDDVGFFWPGSFRQVDQGASVNVGHAQSSNASLVPTVPLPPQASATPDLTLKL 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g02526 245 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Pste3g02526 245 MobiDBLite consensus disorder prediction 223 245 - -
Pste3g02526 245 MobiDBLite consensus disorder prediction 67 86 - -
Pste3g02526 245 MobiDBLite consensus disorder prediction 1 50 - -
Pste3g02526 245 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 121 IPR013087 -
Pste3g02526 245 SUPERFAMILY beta-beta-alpha zinc fingers 92 122 IPR036236 -
Pste3g02526 245 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 18 168 IPR044246 GO:0009788
Pste3g02526 245 FunFam Zinc finger protein 2 71 140 - -
Pste3g02526 245 Gene3D Classic Zinc Finger 82 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g02526 Pste-Chr3 18104073 18104810 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g02526 88 245 C2H2 Transcription Factor Family AT1G66140 45.055 1.09e-42 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste3g02526 None None None