Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g02517 ATGACCAAGTCCTCTTCTGAAAAGAATGGACTCAACAAAGGTCCATGGACTCCTGAGGAAGACCACAAACTCATCACTTACATTCACAAACATGGACATGGCAAATGGCGAACCCTTCCCAAAAATGCAGGACTGAAAAGATGTGGAAAGAGTTGTCGGCTTCGCTGGGCTAACTACTTGAGGCCTGATATAAAGAGAGGGAAATTCTCATTCGAAGAAGAAGAAGCCATCATCCAGCTACATAGTGTTTTGGGAAACAAGTGGTCTACAATTGCTGCTAACTTGCCAGGAAGAACAGATAACGAGATAAAAAATTATTGGAACACTCACATCAAGAAAAAGTTATTGAAAATGGGGATTGATCCAGTGACACACACACCTCGCCTTGATGTTCTACAACTTGCCTCAATTCTGAACACATCTTTATACAATTCATCCCAATTTAACCACACTGTTCTTTCTAATATGGGAAGATCAGTGATAAACCCAAGCCAACTGCTAAGTTTACTCACCACTCTGCTATCATGTCAAAGCAGAAACAACCTTGATATATTGAATCATAATTACCAGCAAAATAATAACCAATTTATTGGTAGCACTTTATTGCAAAATCAACCACAATGCTCCCAACCAATGCAATTTGATTCTACTATACAAACCTTCCTACCAAACCAACCCCAGGTCACACTTCAAGAAAATAATATTGCTAAGTCTAATTCTGATCCATTGAATATGGAGCCCCAAGTTATGAAAACTAAATTAGAGCATCAAATGTCTCCAATTGTTAACTCTTTTGGCCACCAAAACACACTACCAAATTTGTGGCATTATAATAATGGAGATCACATATCAGATCTACCAATGGCCCAATCATTATCATCTATGCAATGTTTCTCTTCTCCCAAGTTCAACTCTATGTTCAACAATCTCTTGGAAAATCAGAATTTGTTTAACAACGAGGGGGTGCTGAATTTCCATATAAGTTCACTGTTATCGTCCACACCCTCATCTTCTAGCCCCAGTACTTTGAATTCATCATCTTCCACTACATTTGTCAACGGAACCACTGAAGATGAAAGGGACACTTACGGCAGCAACATGTTGATGTATAACATTTCAAATGGTTTGAATGATTCTGGACTTTTGTGATTGAACTCCAT 1160 0.3853 MTKSSSEKNGLNKGPWTPEEDHKLITYIHKHGHGKWRTLPKNAGLKRCGKSCRLRWANYLRPDIKRGKFSFEEEEAIIQLHSVLGNKWSTIAANLPGRTDNEIKNYWNTHIKKKLLKMGIDPVTHTPRLDVLQLASILNTSLYNSSQFNHTVLSNMGRSVINPSQLLSLLTTLLSCQSRNNLDILNHNYQQNNNQFIGSTLLQNQPQCSQPMQFDSTIQTFLPNQPQVTLQENNIAKSNSDPLNMEPQVMKTKLEHQMSPIVNSFGHQNTLPNLWHYNNGDHISDLPMAQSLSSMQCFSSPKFNSMFNNLLENQNLFNNEGVLNFHISSLLSSTPSSSSPSTLNSSSSTTFVNGTTEDERDTYGSNMLMYNISNGLNDSGLL 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g02517 382 SMART sant 12 62 IPR001005 -
Pste3g02517 382 SMART sant 65 113 IPR001005 -
Pste3g02517 382 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Pste3g02517 382 Gene3D - 13 65 - -
Pste3g02517 382 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Pste3g02517 382 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Pste3g02517 382 CDD SANT 68 111 IPR001005 -
Pste3g02517 382 MobiDBLite consensus disorder prediction 335 358 - -
Pste3g02517 382 CDD SANT 15 60 IPR001005 -
Pste3g02517 382 FunFam MYB-related transcription factor 12 65 - -
Pste3g02517 382 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Pste3g02517 382 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Pste3g02517 382 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 272 - -
Pste3g02517 382 FunFam Transcription factor MYB39 68 129 - -
Pste3g02517 382 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Pste3g02517 382 Gene3D - 68 115 - -
Pste3g02517 382 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g02517 Pste-Chr3 17931433 17933503 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g02517 7 382 MYB Transcription Factor Family AT4G21440 45.385 4.64e-91 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste3g02517 Myb_DNA-binding 5.4e-16 CL0123