Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g02491 GAAAATATAGGGAAAATGCAGATAACAAAAAAAAAAAAAAGTCAAGGAGGGTGTCTCTGGGCGACGTTTTCTTCGTTTTTTCACTTTTTGGTCGCATATTAATAATCGGAGACGAGAAGTGTAGTCCAGTGAGAGAGAAACATTGAGAGAGGAAAGAGCGTGAAAAGACCAAATTGACCTTGGATCTTCGTCTTTCCTCTCTCTCGCTTCTGCTAACTCTCGCTCCGATTCGTTTTGATTGGTCTTCTAGAAGCTTCCACAATGAACGGGAAGGCCAACGTCTCCAAAGAGCTCAACGCCAAGCACAAGAAGATACTGGAAGGGCTTCTTAAATTACAGGAGAACAGGGAATGCGCTGACTGCAAAGCTAAAGGACCTAGATGGGCTAGTGTAAATCTTGGCATTTTTATATGCATGCAGTGTTCAGGGATTCATCGAAGTTTGGGGGTACACATATCAAAGGTGATGTTTCGTTCCTTGGTTCGTTCTGCAACCCTGGACACTTGGCTACCAGAGCAAGTTGCATTCATTCAATCAATGGGAAATGAGAAAGCAAATAGTTACTGGGAAGCAGAATTACCTCCAAATTATGATAGAGTTGGAATTGAGAATTTCATCCGTGCAAAGTATGACGAGAAGAGATGGGTTCCAAGAGATGGGAATTCAAAAACACCTTCAGGATTGCTGGAAGAGAAAAACCCTTCACGTTGGCAGAGACCTGTGGAGAGAAGTGGCTATGCTACTGTTTCTGAGAATACATCTGAAGAAAGGAAGAAAATCCAACCATCGAATGCAATTCCTACCGCAAGAATTAATGTTCCTGCTCCTCCCAGAGCACCTGAGCAGGTAACTTCTATTACTAAACCTCAGCATGTGGAGAAGGTGGAACCTGTAGCACCACAACCACAAGCACCCCAACCACAAGCTGAAACATCAAAGCAGGCTATGAACACAGTTCCAAATACCCCTCCAAAAGTTGACTATGCTACAGACCTTTTCAATATGTTGTCTATGGATGTCCCTAATGAAAATGGTTCTGAGGCAGCTGGTACAACTACCGATGATAATCACTGGGCAGGTTTTCAGGCTGCTGCCGAGGTGTCAACAGCTGAGAAGACTAGTCCGCCGAAAGCAGCTGATAGTTCTCCATCTTCTGCATCTGGAATTGAGGATCTTTTCAAAGATTTACCTTCTGTAACACCAAGCTTGACTCCAGAAAAACCACAGAAAGATGTGAAAAATGATATCATGAGCCTGTTTGAGAAGGGAAATATGGTGTCTCCATTTTCCATGCATCAACAGCAGCTTGCTATGCTAGCACAGCAGCAGTCTCTTCTAATGGTTGCTGCTGCAGCTAAATCTACAGCTGGGGATCCTAAATATCCAGTTAATATACAACAACCTAGACCATATGTTCCTATCCAAAGTTTGCCAGCCACTGGCTACTCGATTCCTGGAGTAATGCCCATGGGTGGTCAGGGAGAGCTGCAAAAACTTATGCTGGGTCAAACTAGGAACATGACCCCAACACAATTTGCAGGGAGCTCTGTTCAATATCCACCATCCAGTTTCTATGGTATGGGACAAGTTCCTCCAGTTAACGGTATGATGACGACGATGGGAATTAGTAAACCTCAGTCGGGAGCTCCAGTGTCATCTAGCACTACACAGTCTGCAAAGGATTACGATTTTTCCTCCTTAACACAGGGGATGTTTACGAAACACTGATTGGTCTTTTTGTTGGGCAATGCCCACTGTGTCATATATCATAGAAGATTAGTTAAAATTACATCAAGTGCACTTTCTTTTGTCGTTTTGTGGGTTGTAATCCATTTGTAGAGCTAGTTCAGGTTTTTCCCGTTTATTTATTTCAGGTGATTGCTTCATTTGTATCCCTAGTTGTATTCACTATTTATTTATTCACAATAAAAGTTAGTGATATTAATTATATATATAGTCC 1960 0.425 MNGKANVSKELNAKHKKILEGLLKLQENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVMFRSLVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYDEKRWVPRDGNSKTPSGLLEEKNPSRWQRPVERSGYATVSENTSEERKKIQPSNAIPTARINVPAPPRAPEQVTSITKPQHVEKVEPVAPQPQAPQPQAETSKQAMNTVPNTPPKVDYATDLFNMLSMDVPNENGSEAAGTTTDDNHWAGFQAAAEVSTAEKTSPPKAADSSPSSASGIEDLFKDLPSVTPSLTPEKPQKDVKNDIMSLFEKGNMVSPFSMHQQQLAMLAQQQSLLMVAAAAKSTAGDPKYPVNIQQPRPYVPIQSLPATGYSIPGVMPMGGQGELQKLMLGQTRNMTPTQFAGSSVQYPPSSFYGMGQVPPVNGMMTTMGISKPQSGAPVSSSTTQSAKDYDFSSLTQGMFTKH 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g02491 488 Gene3D Arf GTPase activating protein 2 136 IPR038508 -
Pste3g02491 488 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Pste3g02491 488 PRINTS HIV Rev interacting protein signature 74 95 IPR001164 GO:0005096
Pste3g02491 488 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Pste3g02491 488 FunFam stromal membrane-associated protein 1 isoform X1 1 134 - -
Pste3g02491 488 Pfam Putative GTPase activating protein for Arf 17 129 IPR001164 GO:0005096
Pste3g02491 488 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 488 IPR044520 GO:0005096
Pste3g02491 488 SMART arf_gap_3 16 136 IPR001164 GO:0005096
Pste3g02491 488 MobiDBLite consensus disorder prediction 130 236 - -
Pste3g02491 488 MobiDBLite consensus disorder prediction 278 303 - -
Pste3g02491 488 CDD ArfGap 19 123 - -
Pste3g02491 488 MobiDBLite consensus disorder prediction 218 236 - -
Pste3g02491 488 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 136 IPR001164 GO:0005096
Pste3g02491 488 MobiDBLite consensus disorder prediction 287 301 - -
Pste3g02491 488 SUPERFAMILY ArfGap/RecO-like zinc finger 15 130 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g02491 Pste-Chr3 17712805 17718816 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g02491 16 129 C2H2 Transcription Factor Family AT4G05330 45.082 2.59e-26 107