Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g02450 GGGAAGTCCAAGGAAAAGAAGGGGAGGACAAAACAAAAGAGAGAGAGACAGAACAGAAAGCAAAGGAAAACGGCGAGAGGAGAGAAGAGGCAGAAGAGGAGATTGATTGATTATATAAGAAAAGAAAAAGAAAAATCCGCGCAAGAAATATGGTTTGGACTTTCTGAGACACACAAGAACAGCATTGTGAGCGGGAGCGCATTGGAGGCGGGTCGGGTCGGGTCGAGGTGGGATTGGAAGCCGGATCTGATAGGTGATCGGATCGATTTGACGGTTGTTGAGGAGGGCATTTTCATTGCCAATGGGAATGCCCAATCCCAATATTATCTCTTGTGCACCATGAGCAAAGCCCTGGGAGAAGACGAAGACGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGAAGAAGAAGAAGAAGATTGCTTCTACGACACTCACGACCGCTTGCTCTCACTCTCGTCCTCCTGCTCCTGCTCCGATAACGAAAACGAAAACGACCCCGAAGATCAGCCTGTCCCCAATTTCCCTCTCTCCAACTACGATGTATGGATCTCCCAACCCTCTTCCGTATCGGAACGCCGCACGCGCCTCCTCGTCTCCCTCGGACTCTCCCGCCCCGATCGCGCTCCCCCTCTCCGATCCGTATCCGACACCGCCGTCTCCTCCTCCCTCGCCCCGCCCAACCCTAATCCAAGGCCGCCTCCTCCTCCTCCTCCAACCGAGGAACTCTGCACCATTCGCGATCTCGATAACGGAAAAGAGTTCGTGGTGAGCCAGTGGGAGGAATTGCGTGAGGTTGCCACGGGCCGCCAATTGACCATGGAGGAGTTTGAAATGACGGTCGGCCACTCCCCCATCGTTCAGGAACTCATGCGGAGGCAGAACGTTGAGGAGGCCACCGTTGATTCCAATGTCACTGCTTCCAAGGTCAAGAAGAAGGGCGGGAGCTGGTTCAAGAGTATCAAGAGTGTCGCCACTTCCGTCTCCGGCTACAGGGATCGCCGGAGTAGTGATGACCGGGATACCTCGTCCGAGAAGGGCGGCCGCCGCTCCAGTTCCGCCACCGATGACAGCCAGGACGCCGCCTTTCACTGCCCGGAGAGGGTCAGGGTCAAGCAGTATGGCAAGAGTTGCAAGGAGCTCACTGCTTTGTACAAGAGTCAAGAGATTCAGGCTCATACTGGCTCTATTTGGAGCATTAAGTTTAGTTTGGATGGCAAGTATTTGGCCAGTGCCGGTGGTCGAGGGGGAGAGGAAGGGGACTTGCTCTTGTTGGATAGGGATAAGCTTGATGATGGGACTCATAATAATAATAATAATAATAATAATAATAATAATAATGTCAATATGTTTTTCCTTCTAAATGGCTCACCGGAGCCCACGGCGGCGATGCTGTCACCCCTTGGGGATGGAGAGAGGAAGAGGAAGGGCCGTTCCAGTGTTAGTAGGAAGTCCTTGAGCTTGGACCAGTTTCTGGTTCCCCAGACCGTCTTTGCGCTCACTGACAAGCCCGTTTGCTCCTTTCAGGGACATCTTCATGATGTTCTTGACCTCTCATGGTCCAAATCTCAGCACTTGCTCTCATCTTCAATGGACAAAACTGTGCGGCTGTGGCATCTGTCTAGCAACTCTTGTTTGAAAATATTTTCACACAGTGACTATGTAACTTGCATCCAGTTTAATCCTGTTGATGATAGATACTTCATTAGCGGATCTTTGGATGCTAAAGTTCGCATATGGAGCATTCCTGATCGACAAGTTGTTGATTGGACTGATCTGCATGAGATGGTCACAGCTGCTTGTTACACACCTGATGGTCAGGGTGCACTGGTTGGTTCATACAAGGGTAGCTGTCATTTATATAATACGTCTGAAAATAAGTTGCAACAGAAAAGTCAGATCAATCTGCAGAACAAGAAAAAGAAATCACATCACAAGAAAATCACTGGTTTCCAGTTTGCCCCAGGAAGTTCATCAGAAGTACTTATCACATCTGCCGACTCACGAATTCGGGTGGTTGATGGTGTTGATCTGGTTCATAAGTTTAAAGGCTTTCGGAATGCTACCAGCCCGATTTCAGCATACCTCACAGCAAATGGTAAACATGTTATTGCAGCCAGCGAGGACTCCCATGTATACATCTGGAAAAATGAGGCTGATTGCAGGCCTAACAGAAGTAAAGGTGTTAGTGTCACACGATCATATGAACATTTTCACTGTAAAGATGTGTCGGTTGCCATTCCCTGGCCTGGTATGGGTGATGCATGGGACATTCATGATACATTTTCTGGAGAACAACCTGAGCTTGATAACAATGCTGATGAAGTTTCATCCGCCAATCATCCTCCTACTCCTGTAGAGGAAACCTTTGTTGCTGAGGATTCAAGATCTGTATCCGGTTACAGCAATAGTCCACGCCATGCAACCATCGCAAGTGCCCCAAATAGTTACTTTTTTGATAGAATATCTGCAACATGGCCAGAGGAAAAACTTCTTTTGGCTACAAGAAACCGAAGCCCTCGTATCAGTATGGATTTCTCTAATGGGGTAAGTCAAAAAATGTCAGCCTGGGGTATGGTGGTTGTAACTGCCGGCCTTCGTGGGGAAATTCGAACTTTCCAAAATTTTGGATTACCACTTCGGATATAAAGGTGAAAAAATATGCATGCTTATGAACACGACGGATAATGAGTTGATATCATCAGCTCAGAAGGCAGTAGAGTTTACCTTCTCCATTAGTTGCTCAAAACTGTACAGAAAAGTGGGTGAGATTTGTAATATTAGCGGGGTTCATTTCTTTTCTTGTTCTTGTGCGTTGGATTATATGTTGCCATTCCATTCAGGCACTGAGCGGGGGTAAAGGGGGAAACATTGTCAAACAAAAACAAGAAAAAAAAAAAAAAAAAAAAAGTTACACAAGGAATTTAGAAACCGATGGATGTAATCGGCAATTGTAGAGTAACGCGAGCATGGGAAAAGCTTATTGAAATTAGAAATTATGATTCTTTTACACTTATTTGTCTTGAGTTTTGTCATGGAATTTGCCCAAAGTTAATCAATTTCAATAAAATAGCGTAGTTACAAGTA 3084 0.4666 GKSKEKKGRTKQKRERQNRKQRKTARGEKRQKRRLIDYIRKEKEKSAQEIWFGLSETHKNSIVSGSALEAGRVGSRWDWKPDLIGDRIDLTVVEEGIFIANGNAQSQYYLLCTMSKALGEDEDEEEEEEEEEGEEEEEDCFYDTHDRLLSLSSSCSCSDNENENDPEDQPVPNFPLSNYDVWISQPSSVSERRTRLLVSLGLSRPDRAPPLRSVSDTAVSSSLAPPNPNPRPPPPPPPTEELCTIRDLDNGKEFVVSQWEELREVATGRQLTMEEFEMTVGHSPIVQELMRRQNVEEATVDSNVTASKVKKKGGSWFKSIKSVATSVSGYRDRRSSDDRDTSSEKGGRRSSSATDDSQDAAFHCPERVRVKQYGKSCKELTALYKSQEIQAHTGSIWSIKFSLDGKYLASAGGRGGEEGDLLLLDRDKLDDGTHNNNNNNNNNNNNVNMFFLLNGSPEPTAAMLSPLGDGERKRKGRSSVSRKSLSLDQFLVPQTVFALTDKPVCSFQGHLHDVLDLSWSKSQHLLSSSMDKTVRLWHLSSNSCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPDRQVVDWTDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSQINLQNKKKKSHHKKITGFQFAPGSSSEVLITSADSRIRVVDGVDLVHKFKGFRNATSPISAYLTANGKHVIAASEDSHVYIWKNEADCRPNRSKGVSVTRSYEHFHCKDVSVAIPWPGMGDAWDIHDTFSGEQPELDNNADEVSSANHPPTPVEETFVAEDSRSVSGYSNSPRHATIASAPNSYFFDRISATWPEEKLLLATRNRSPRISMDFSNGVSQKMSAWGMVVVTAGLRGEIRTFQNFGLPLRI 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g02450 881 SMART WD40_4 500 538 IPR001680 GO:0005515
Pste3g02450 881 SMART WD40_4 541 580 IPR001680 GO:0005515
Pste3g02450 881 SMART WD40_4 583 621 IPR001680 GO:0005515
Pste3g02450 881 SMART WD40_4 674 715 IPR001680 GO:0005515
Pste3g02450 881 SMART WD40_4 628 673 IPR001680 GO:0005515
Pste3g02450 881 SMART WD40_4 382 425 IPR001680 GO:0005515
Pste3g02450 881 MobiDBLite consensus disorder prediction 119 141 - -
Pste3g02450 881 FunFam WD repeat-containing protein 44 488 754 - -
Pste3g02450 881 ProSiteProfiles Trp-Asp (WD) repeats profile. 507 547 IPR001680 GO:0005515
Pste3g02450 881 MobiDBLite consensus disorder prediction 762 784 - -
Pste3g02450 881 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 507 541 - -
Pste3g02450 881 MobiDBLite consensus disorder prediction 331 352 - -
Pste3g02450 881 MobiDBLite consensus disorder prediction 1 29 - -
Pste3g02450 881 Coils Coil 118 139 - -
Pste3g02450 881 MobiDBLite consensus disorder prediction 203 240 - -
Pste3g02450 881 Pfam WD domain, G-beta repeat 502 537 IPR001680 GO:0005515
Pste3g02450 881 Pfam WD domain, G-beta repeat 543 580 IPR001680 GO:0005515
Pste3g02450 881 ProSiteProfiles Trp-Asp (WD) repeats profile. 547 581 IPR001680 GO:0005515
Pste3g02450 881 MobiDBLite consensus disorder prediction 1 31 - -
Pste3g02450 881 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 547 581 - -
Pste3g02450 881 MobiDBLite consensus disorder prediction 225 240 - -
Pste3g02450 881 Gene3D - 374 738 IPR015943 GO:0005515
Pste3g02450 881 SUPERFAMILY WD40 repeat-like 386 715 IPR036322 GO:0005515
Pste3g02450 881 PANTHER WD REPEAT DOMAIN 44 132 878 IPR040324 -
Pste3g02450 881 MobiDBLite consensus disorder prediction 764 783 - -
Pste3g02450 881 MobiDBLite consensus disorder prediction 328 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g02450 Pste-Chr3 17317341 17323370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g02450 495 712 U-box Gene Family AT1G04510 26.891 3.99e-06 48.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g02450 3 17317341 17323370 Pste3g02450 3 17317341 17323370 ECH