Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g02401 ATGGCAGAGTTCACAGAATTGTTTCCCTTGGGCCAACCAGTTGATGGTTTGATGCACGTGTATGTGTATGTGTATGCAATCACTTTTGATCTTCCAACCCTTCTCATTGTTCTATTCATACTCACAATATTGTTCTTCATCTTATATCAAATTCTCAACGGTTTGTTCTTCTGGCTCATTCAAGTGGGGCCAACTGAACATGATCTTGAAGAGAGCATCACTCATTTTGCCAATTATGGGGACTCTGAACCATCACATCATGCTACCATCTTTCATGCCCTTATACATACCAATTTGCATTCTTGGACAGTGGTGACTGCATTTGAAGAGAAAAGAGGACAAAAACTTAGAGCTTCAAAGAAATTGCCCCCTTTAGTGAATTATGGAATGCATCATGTCGCAAGATGTTGTGGTGAATGTGCCATTTGCTTAGAAGAATTTCAAGTTGGCCAATTCTGCCAAGTTTTTCCTGTGTGCAACCACATTTTTCATTCAGATTGCATAGACAACTGGTTGCAGAAGAAATTAACCTGTCCCATATGTCGTACTCGTGTATAG 558 0.3996 MAEFTELFPLGQPVDGLMHVYVYVYAITFDLPTLLIVLFILTILFFILYQILNGLFFWLIQVGPTEHDLEESITHFANYGDSEPSHHATIFHALIHTNLHSWTVVTAFEEKRGQKLRASKKLPPLVNYGMHHVARCCGECAICLEEFQVGQFCQVFPVCNHIFHSDCIDNWLQKKLTCPICRTRV 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g02401 185 Pfam Ring finger domain 139 182 IPR001841 -
Pste3g02401 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 185 IPR013083 -
Pste3g02401 185 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 33 184 IPR044675 -
Pste3g02401 185 SUPERFAMILY RING/U-box 104 185 - -
Pste3g02401 185 CDD RING-H2_PA-TM-RING 139 182 - -
Pste3g02401 185 SMART ring_2 140 181 IPR001841 -
Pste3g02401 185 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g02401 Pste-Chr3 17017376 17017933 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g02401 15 182 C3H Transcription Factor Family AT1G53010 32.203 2.12e-18 76.6