Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g02400 ATGACTGCTGCTTCTCAAGCATTTTCCCCTCAATCTGCCCCAGACCCTCTCACCTTTTCATATTTTGTTGCCAATGCTTCTAATGTGATTCTAATCTTGTTCATTTGCCTTTGTATAGCCACTATATTTTCAACAATAGTTCTCATTCTTCTATTAAAAATCTGTGAAATTATATCTGACATTCTTCTTGAAAGACTTGAGGATGATATTGAAGAAGGAAGAATAACAACTTCGGTAGTTGAATCTTTTCTGACTTACCAAGATGCTTTGAATGAAATAAGTGATCGTAGAGAAAGATTACGATCATATATACAAGCTTATCAGATGAGATCAATTCATAAAGAAGCATCAATCAAACTGCCACAGCTTGTGATTTATGGACAAGATGAGTTGAGATCATTTTGCAGTAATGATTGTGTCATATGTTTGGAGAGCTTCATCACCGGGGAATCTTGCCAAATTCTTCCACCGTGCAACCACTTATTTCATTCTTACTGCATAAAACATTGGTTGAAAGACAACGTCACTTGCCCGGTTTGTCGAAATTGTCTGTTAGAAACATGA 564 0.3617 MTAASQAFSPQSAPDPLTFSYFVANASNVILILFICLCIATIFSTIVLILLLKICEIISDILLERLEDDIEEGRITTSVVESFLTYQDALNEISDRRERLRSYIQAYQMRSIHKEASIKLPQLVIYGQDELRSFCSNDCVICLESFITGESCQILPPCNHLFHSYCIKHWLKDNVTCPVCRNCLLET 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g02400 187 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 29 182 IPR044675 -
Pste3g02400 187 SUPERFAMILY RING/U-box 138 185 - -
Pste3g02400 187 ProSiteProfiles Zinc finger RING-type profile. 139 181 IPR001841 -
Pste3g02400 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 185 IPR013083 -
Pste3g02400 187 SMART ring_2 139 180 IPR001841 -
Pste3g02400 187 Pfam Ring finger domain 137 181 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g02400 Pste-Chr3 17014168 17014731 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g02400 31 187 C3H Transcription Factor Family AT1G53010 31.138 1.01e-17 75.1